Variant report

Variant	rs62133323
Chromosome Location	chr2:37684547-37684548
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 7 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:3)

rs_ID	r²[population]
rs13383513	0.81[EUR][1000 genomes]
rs56093822	0.86[EUR][1000 genomes]
rs62135571	0.89[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv833814	chr2:37643132-37840247	Active TSS Enhancers Weak transcription ZNF genes & repeats Flanking Active TSS Bivalent Enhancer Strong transcription Genic enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
2	nsv456374	chr2:37669487-37868214	Weak transcription Flanking Active TSS Enhancers Strong transcription Active TSS Genic enhancers Bivalent/Poised TSS ZNF genes & repeats Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
3	nsv470453	chr2:37669487-37868214	Weak transcription Enhancers Flanking Active TSS Active TSS Genic enhancers ZNF genes & repeats Strong transcription Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
4	nsv581473	chr2:37669487-37868214	Enhancers Flanking Active TSS Weak transcription Active TSS ZNF genes & repeats Strong transcription Genic enhancers Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:60 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr2:37677000-37686400	Weak transcription	Fetal Lung	lung
2	chr2:37677800-37695400	Weak transcription	Aorta	Aorta
3	chr2:37681800-37686800	Enhancers	NH-A	brain
4	chr2:37682000-37684600	Enhancers	Fetal Stomach	stomach
5	chr2:37682000-37684800	Enhancers	NHEK	skin
6	chr2:37682000-37688400	Enhancers	Fetal Heart	heart
7	chr2:37682200-37684800	Enhancers	Primary T killer naive cells fromperipheralblood	blood
8	chr2:37682400-37684600	Enhancers	Small Intestine	intestine
9	chr2:37682800-37684800	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Female	--
10	chr2:37682800-37685800	Weak transcription	Rectal Smooth Muscle	rectum
11	chr2:37682800-37686400	Weak transcription	Fetal Kidney	kidney
12	chr2:37682800-37688000	Enhancers	HUVEC	blood vessel
13	chr2:37683000-37684800	Enhancers	Primary hematopoietic stem cells short term culture	blood
14	chr2:37683000-37685000	Enhancers	Primary T cells fromperipheralblood	blood
15	chr2:37683200-37684600	Enhancers	Primary Natural Killer cells fromperipheralblood	blood
16	chr2:37683200-37685400	Enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
17	chr2:37683400-37684600	Enhancers	Fetal Thymus	thymus
18	chr2:37683400-37688400	Enhancers	HSMM	muscle
19	chr2:37683600-37684600	Enhancers	Muscle Satellite Cultured Cells	--
20	chr2:37683600-37684600	Enhancers	Foreskin Fibroblast Primary Cells skin02	Skin
21	chr2:37683600-37684600	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin
22	chr2:37683600-37684600	Enhancers	HSMMtube	muscle
23	chr2:37683600-37687200	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
24	chr2:37683600-37688600	Enhancers	NHDF-Ad	bronchial
25	chr2:37683800-37684600	Enhancers	Ovary	ovary
26	chr2:37683800-37684800	Enhancers	Primary T cells from cord blood	blood
27	chr2:37683800-37685200	Enhancers	Primary T helper naive cells from peripheral blood	blood
28	chr2:37683800-37685200	Enhancers	Primary T cells effector/memory enriched fromperipheralblood	blood
29	chr2:37683800-37686600	Weak transcription	Stomach Smooth Muscle	stomach
30	chr2:37683800-37688600	Enhancers	NHLF	lung
31	chr2:37684000-37684600	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Male	--
32	chr2:37684000-37685800	Weak transcription	HMEC	breast
33	chr2:37684000-37687200	Weak transcription	Adipose Nuclei	Adipose
34	chr2:37684000-37687600	Weak transcription	Lung	lung
35	chr2:37684000-37687600	Weak transcription	Right Ventricle	heart
36	chr2:37684000-37687600	Weak transcription	Skeletal Muscle Female	skeletal muscle
37	chr2:37684000-37688200	Enhancers	Primary T helper cells PMA-I stimulated	--
38	chr2:37684000-37691200	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
39	chr2:37684200-37685000	Enhancers	Primary T helper cells fromperipheralblood	blood
40	chr2:37684200-37685000	Enhancers	Primary T killer memory cells from peripheral blood	blood
41	chr2:37684200-37685200	Enhancers	Primary T regulatory cells fromperipheralblood	blood
42	chr2:37684200-37685400	Flanking Active TSS	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
43	chr2:37684200-37685600	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
44	chr2:37684200-37686000	Enhancers	Primary T helper 17 cells PMA-I stimulated	--
45	chr2:37684200-37686200	Weak transcription	Colon Smooth Muscle	Colon
46	chr2:37684200-37686400	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
47	chr2:37684200-37687200	Weak transcription	Right Atrium	heart
48	chr2:37684200-37688600	Enhancers	Primary T helper memory cells from peripheral blood 1	blood
49	chr2:37684400-37684600	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
50	chr2:37684400-37684800	Enhancers	H1 Derived Mesenchymal Stem Cells	ES cell derived

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