Variant report
Variant | rs62137452 |
---|---|
Chromosome Location | chr2:49086811-49086812 |
allele | A/G |
Outlinks | Ensembl   UCSC |
- TF binding region (count:0)
- CpG islands (count:0)
- Chromatin interactive region (count:1)
- LncRNA region (count:0)
- Mature miRNA region (count: 0)
- miRNA target sites (count:0)
No data |
No data |
(count:1 , 50 per page) page:
1
No. | Distal block | Cell Line | Cell type | Cell Stage |
---|---|---|---|---|
1 | chr2:49080769..49083086-chr2:49086686..49089047,2 | MCF-7 | breast: |
No data |
No data |
No data |
No data |
rs_ID | r2[population] |
---|---|
rs4481040 | 0.85[AMR][1000 genomes];0.93[EUR][1000 genomes] |
rs56963902 | 1.00[EUR][1000 genomes] |
rs62137362 | 0.86[EUR][1000 genomes] |
rs62137363 | 0.86[EUR][1000 genomes] |
rs62137365 | 0.86[EUR][1000 genomes] |
rs62137368 | 0.86[EUR][1000 genomes] |
rs62137393 | 1.00[AMR][1000 genomes];1.00[EUR][1000 genomes] |
rs62137394 | 1.00[AMR][1000 genomes];1.00[EUR][1000 genomes] |
rs62137396 | 1.00[AMR][1000 genomes];1.00[EUR][1000 genomes] |
rs62137397 | 1.00[AMR][1000 genomes];1.00[EUR][1000 genomes] |
rs62137399 | 1.00[AMR][1000 genomes];1.00[EUR][1000 genomes] |
rs62137400 | 0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes] |
rs62137402 | 1.00[AMR][1000 genomes];1.00[EUR][1000 genomes] |
rs62137403 | 1.00[AMR][1000 genomes];1.00[EUR][1000 genomes] |
rs62137444 | 0.92[AMR][1000 genomes];1.00[EUR][1000 genomes] |
rs62137445 | 0.92[AMR][1000 genomes];1.00[EUR][1000 genomes] |
rs62137449 | 0.85[AMR][1000 genomes];1.00[EUR][1000 genomes] |
rs62137450 | 0.85[AMR][1000 genomes];1.00[EUR][1000 genomes] |
rs62137451 | 0.85[AMR][1000 genomes];1.00[EUR][1000 genomes] |
rs62137454 | 0.92[AMR][1000 genomes];1.00[EUR][1000 genomes] |
rs62161788 | 0.85[AMR][1000 genomes];0.86[EUR][1000 genomes] |
rs62161789 | 0.85[AMR][1000 genomes];0.80[EUR][1000 genomes] |
rs72884590 | 0.86[EUR][1000 genomes] |
rs72886209 | 0.85[AMR][1000 genomes];0.85[EUR][1000 genomes] |
rs72889120 | 0.85[AMR][1000 genomes];1.00[EUR][1000 genomes] |

No. | Variant name | Chromosome position | Chromatin state | Related regulatory elements | Target genes | Extended variants | Associated traits |
---|---|---|---|---|---|---|---|
1 | nsv1002793 | chr2:48771220-49466550 | ZNF genes & repeats Enhancers Weak transcription Bivalent Enhancer Strong transcription Genic enhancers Active TSS Flanking Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS Transcr. at gene 5' and 3' | TF binding regionCpG islandChromatin interactive regionlncRNAmiRNAmiRNA target site | 11 gene(s) | inside rSNPs | diseases |
2 | nsv1004965 | chr2:48796170-49443587 | Bivalent Enhancer Enhancers Weak transcription Strong transcription ZNF genes & repeats Genic enhancers Active TSS Flanking Active TSS Bivalent/Poised TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' | TF binding regionCpG islandChromatin interactive regionlncRNAmiRNAmiRNA target site | 10 gene(s) | inside rSNPs | diseases |
3 | nsv535684 | chr2:48796170-49443587 | Enhancers Weak transcription Active TSS Flanking Active TSS Bivalent Enhancer ZNF genes & repeats Flanking Bivalent TSS/Enh Strong transcription Genic enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3' | TF binding regionCpG islandChromatin interactive regionlncRNAmiRNAmiRNA target site | 10 gene(s) | inside rSNPs | diseases |
4 | nsv498119 | chr2:48808834-49422647 | Weak transcription Enhancers Flanking Bivalent TSS/Enh Strong transcription Bivalent Enhancer Flanking Active TSS ZNF genes & repeats Bivalent/Poised TSS Active TSS Genic enhancers Transcr. at gene 5' and 3' | TF binding regionCpG islandChromatin interactive regionlncRNAmiRNAmiRNA target site | 10 gene(s) | inside rSNPs | diseases |
5 | nsv998864 | chr2:49015878-49230000 | Enhancers Flanking Active TSS Strong transcription Weak transcription Active TSS ZNF genes & repeats | TF binding regionCpG islandChromatin interactive regionlncRNA | 3 gene(s) | inside rSNPs | diseases |
6 | nsv874005 | chr2:49086399-49142199 | Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats | Chromatin interactive region | 1 gene(s) | inside rSNPs | diseases |
No data |
No. | Chromosome Location | Chromatin state | Cell line | Tissue |
---|---|---|---|---|
1 | chr2:49086200-49087600 | Weak transcription | IMR90 fetal lung fibroblasts Cell Line | lung |