Variant report

Variant	rs62138099
Chromosome Location	chr19:19197109-19197110
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr19:19192326..19194293-chr19:19196548..19198658,2	K562	blood:
2	chr19:19192793..19194653-chr19:19196551..19198658,2	K562	blood:

Extended variants
information (count: 5 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:2)

rs_ID	r²[population]
rs4808874	1.00[AFR][1000 genomes]
rs62138101	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.91[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv833778	chr19:19012669-19201487	Weak transcription Flanking Active TSS Flanking Bivalent TSS/Enh Enhancers Strong transcription Genic enhancers Active TSS Transcr. at gene 5' and 3' Bivalent/Poised TSS Bivalent Enhancer ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	47 gene(s)	inside rSNPs	diseases
2	nsv1059305	chr19:19131310-19209999	Enhancers Weak transcription Strong transcription Flanking Active TSS Genic enhancers Active TSS Bivalent/Poised TSS Transcr. at gene 5' and 3' ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region	21 gene(s)	inside rSNPs	diseases
3	nsv833779	chr19:19163492-19313091	Enhancers Strong transcription Flanking Active TSS Weak transcription Bivalent Enhancer Active TSS ZNF genes & repeats Bivalent/Poised TSS Genic enhancers Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	34 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:78 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr19:19175400-19207800	Weak transcription	Aorta	Aorta
2	chr19:19176400-19215200	Weak transcription	Sigmoid Colon	Sigmoid Colon
3	chr19:19176400-19215800	Weak transcription	Rectal Smooth Muscle	rectum
4	chr19:19176400-19215800	Weak transcription	NHLF	lung
5	chr19:19176600-19206800	Weak transcription	Fetal Brain Female	brain
6	chr19:19176600-19207200	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
7	chr19:19176600-19208200	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
8	chr19:19177000-19210000	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
9	chr19:19177200-19204800	Weak transcription	Fetal Intestine Large	intestine
10	chr19:19177200-19215400	Weak transcription	Colonic Mucosa	Colon
11	chr19:19178400-19204800	Weak transcription	HepG2	liver
12	chr19:19178600-19198400	Weak transcription	Brain Substantia Nigra	brain
13	chr19:19180200-19216000	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
14	chr19:19180400-19207200	Weak transcription	Brain Inferior Temporal Lobe	brain
15	chr19:19180400-19207800	Weak transcription	Breast Myoepithelial Primary Cells	Breast
16	chr19:19180400-19208000	Weak transcription	Brain Angular Gyrus	brain
17	chr19:19180400-19208000	Weak transcription	Rectal Mucosa Donor 29	rectum
18	chr19:19180400-19208200	Weak transcription	Duodenum Smooth Muscle	Duodenum
19	chr19:19180400-19216400	Weak transcription	Colon Smooth Muscle	Colon
20	chr19:19180400-19219800	Weak transcription	HSMMtube	muscle
21	chr19:19180600-19208200	Weak transcription	Fetal Lung	lung
22	chr19:19180600-19213600	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood
23	chr19:19180600-19245600	Weak transcription	Primary T killer memory cells from peripheral blood	blood
24	chr19:19180600-19248400	Weak transcription	Primary T helper naive cells from peripheral blood	blood
25	chr19:19185400-19208400	Weak transcription	Primary hematopoietic stem cells short term culture	blood
26	chr19:19185400-19221200	Weak transcription	Primary hematopoietic stem cells	blood
27	chr19:19185600-19198600	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
28	chr19:19185600-19198600	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
29	chr19:19185600-19207200	Weak transcription	Duodenum Mucosa	Duodenum
30	chr19:19185600-19211400	Weak transcription	Pancreas	Pancrea
31	chr19:19186400-19206800	Weak transcription	Fetal Thymus	thymus
32	chr19:19186800-19207400	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
33	chr19:19186800-19215200	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
34	chr19:19187000-19205400	Weak transcription	Ovary	ovary
35	chr19:19187400-19207800	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
36	chr19:19188400-19204800	Weak transcription	Primary T helper cells fromperipheralblood	blood
37	chr19:19188400-19209800	Weak transcription	Primary T helper cells PMA-I stimulated	--
38	chr19:19189400-19207200	Weak transcription	Brain Anterior Caudate	brain
39	chr19:19189800-19202800	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
40	chr19:19191400-19205200	Weak transcription	Primary T cells fromperipheralblood	blood
41	chr19:19192000-19197800	Strong transcription	Fetal Stomach	stomach
42	chr19:19192800-19207800	Weak transcription	Adipose Nuclei	Adipose
43	chr19:19193000-19200600	Weak transcription	Right Atrium	heart
44	chr19:19193000-19204800	Weak transcription	Gastric	stomach
45	chr19:19193000-19205400	Weak transcription	Placenta	Placenta
46	chr19:19193200-19201000	Weak transcription	Primary B cells from cord blood	blood
47	chr19:19194200-19214000	Weak transcription	K562	blood
48	chr19:19194400-19208000	Weak transcription	Left Ventricle	heart
49	chr19:19194600-19205400	Weak transcription	Fetal Muscle Leg	muscle
50	chr19:19194600-19206600	Weak transcription	Primary T regulatory cells fromperipheralblood	blood

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links