Variant report

Variant	rs62138364
Chromosome Location	chr2:53238075-53238076
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 46 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:35)

rs_ID	r²[population]
rs10490578	0.86[EUR][1000 genomes]
rs1073802	0.86[EUR][1000 genomes]
rs1077945	0.80[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs11125460	0.87[EUR][1000 genomes]
rs11125468	0.91[EUR][1000 genomes]
rs11681279	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.97[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs12151673	0.85[ASN][1000 genomes]
rs12233020	0.86[EUR][1000 genomes]
rs12474068	0.89[EUR][1000 genomes]
rs12476447	0.80[EUR][1000 genomes]
rs1374255	0.88[AFR][1000 genomes];0.96[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs1376571	0.82[EUR][1000 genomes]
rs17043857	0.87[EUR][1000 genomes]
rs17044006	0.95[AMR][1000 genomes];0.96[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs17044037	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes];0.96[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs17044055	0.80[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs17044069	0.86[AMR][1000 genomes]
rs1912390	0.81[AMR][1000 genomes];0.93[ASN][1000 genomes]
rs1972959	0.82[AMR][1000 genomes]
rs2067947	0.84[ASN][1000 genomes]
rs2121303	0.81[ASN][1000 genomes]
rs2195660	0.94[AFR][1000 genomes];0.95[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2288639	0.80[AMR][1000 genomes];0.94[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs4672154	0.90[ASN][1000 genomes]
rs59013056	0.92[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs60579522	0.82[ASN][1000 genomes]
rs62140315	0.86[EUR][1000 genomes]
rs62140317	0.87[EUR][1000 genomes]
rs62140326	0.95[EUR][1000 genomes]
rs6723602	0.95[EUR][1000 genomes]
rs6755812	0.86[AMR][1000 genomes]
rs72793440	0.83[EUR][1000 genomes]
rs72795360	0.80[EUR][1000 genomes]
rs72797214	0.86[AMR][1000 genomes]
rs7595496	0.96[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:11 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1010978	chr2:52959769-53249951	Enhancers Weak transcription Active TSS Flanking Active TSS ZNF genes & repeats Bivalent Enhancer Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
2	nsv520722	chr2:53039770-53421015	Flanking Active TSS Weak transcription ZNF genes & repeats Enhancers Active TSS Bivalent Enhancer Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
3	nsv1012463	chr2:53187151-53377118	Enhancers Weak transcription Flanking Active TSS Active TSS Bivalent Enhancer ZNF genes & repeats	Chromatin interactive region	1 gene(s)	inside rSNPs	n/a
4	nsv1011257	chr2:53212297-53270575	Enhancers Weak transcription Bivalent Enhancer ZNF genes & repeats	n/a	n/a	inside rSNPs	n/a
5	nsv874139	chr2:53216917-53277205	Enhancers Weak transcription Bivalent Enhancer ZNF genes & repeats	n/a	n/a	inside rSNPs	n/a
6	nsv581979	chr2:53216917-53288066	Enhancers Weak transcription Bivalent Enhancer ZNF genes & repeats	n/a	n/a	inside rSNPs	n/a
7	nsv874140	chr2:53218774-53277205	Enhancers Bivalent Enhancer Weak transcription ZNF genes & repeats	n/a	n/a	inside rSNPs	n/a
8	nsv1000235	chr2:53218841-53290638	Enhancers Weak transcription ZNF genes & repeats Bivalent Enhancer	n/a	n/a	inside rSNPs	n/a
9	nsv581980	chr2:53219203-53283334	Enhancers Weak transcription Bivalent Enhancer ZNF genes & repeats	n/a	n/a	inside rSNPs	n/a
10	nsv1014197	chr2:53219203-53290638	Bivalent Enhancer Weak transcription Enhancers ZNF genes & repeats	n/a	n/a	inside rSNPs	n/a
11	nsv581981	chr2:53222962-53283334	Enhancers Weak transcription Bivalent Enhancer ZNF genes & repeats	n/a	n/a	inside rSNPs	n/a

No data

Chromatin state (count:1 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr2:53238000-53238200	ZNF genes & repeats	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links