Variant report

Variant	rs62138455
Chromosome Location	chr2:47575066-47575067
allele	A/C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 18 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:11)

rs_ID	r²[population]
rs17218055	1.00[AMR][1000 genomes]
rs17218104	1.00[AMR][1000 genomes]
rs17224444	1.00[AMR][1000 genomes]
rs56116962	1.00[AMR][1000 genomes]
rs62138457	1.00[AMR][1000 genomes]
rs62139661	1.00[AMR][1000 genomes]
rs62139666	1.00[AMR][1000 genomes]
rs62139706	0.83[AFR][1000 genomes]
rs62139722	1.00[AMR][1000 genomes]
rs62139723	1.00[AMR][1000 genomes]
rs62140871	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:7 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv817517	chr2:46819371-47715140	Enhancers Weak transcription Genic enhancers Bivalent Enhancer Flanking Active TSS Strong transcription Active TSS Transcr. at gene 5' and 3' ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	152 gene(s)	inside rSNPs	diseases
2	nsv1004828	chr2:47056849-47814482	Weak transcription Enhancers Strong transcription Genic enhancers Flanking Active TSS Transcr. at gene 5' and 3' Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS Bivalent Enhancer ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	144 gene(s)	inside rSNPs	diseases
3	nsv531348	chr2:47433147-47827310	Flanking Bivalent TSS/Enh Weak transcription Strong transcription Enhancers Flanking Active TSS Genic enhancers Active TSS Bivalent Enhancer Bivalent/Poised TSS ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	50 gene(s)	inside rSNPs	diseases
4	nsv999576	chr2:47506116-47773960	Weak transcription Strong transcription Flanking Active TSS Active TSS Flanking Bivalent TSS/Enh Enhancers Bivalent/Poised TSS Genic enhancers Bivalent Enhancer ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	43 gene(s)	inside rSNPs	diseases
5	nsv524003	chr2:47543245-47590034	Weak transcription Enhancers Flanking Active TSS Genic enhancers Active TSS Strong transcription Bivalent/Poised TSS Bivalent Enhancer ZNF genes & repeats Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	20 gene(s)	inside rSNPs	diseases
6	nsv581756	chr2:47552706-47590930	Flanking Active TSS Weak transcription Enhancers Flanking Bivalent TSS/Enh Genic enhancers Active TSS Bivalent Enhancer Strong transcription ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	18 gene(s)	inside rSNPs	diseases
7	nsv1009586	chr2:47552706-47621487	Strong transcription Flanking Active TSS Enhancers Weak transcription Flanking Bivalent TSS/Enh Bivalent Enhancer Active TSS Transcr. at gene 5' and 3' Bivalent/Poised TSS Genic enhancers ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA	29 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:19 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr2:47573800-47578800	Weak transcription	Fetal Kidney	kidney
2	chr2:47574400-47578400	Weak transcription	Fetal Lung	lung
3	chr2:47574400-47578400	Weak transcription	A549	lung
4	chr2:47574400-47578800	Weak transcription	Duodenum Mucosa	Duodenum
5	chr2:47574400-47580600	Weak transcription	Sigmoid Colon	Sigmoid Colon
6	chr2:47574400-47584400	Weak transcription	Right Atrium	heart
7	chr2:47574600-47576000	Weak transcription	Fetal Heart	heart
8	chr2:47574600-47578000	Weak transcription	Fetal Intestine Large	intestine
9	chr2:47574800-47576200	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
10	chr2:47574800-47578000	Weak transcription	HepG2	liver
11	chr2:47574800-47578200	Weak transcription	Fetal Intestine Small	intestine
12	chr2:47574800-47579000	Weak transcription	Fetal Stomach	stomach
13	chr2:47574800-47579200	Weak transcription	Pancreas	Pancrea
14	chr2:47574800-47580600	Weak transcription	Rectal Mucosa Donor 31	rectum
15	chr2:47574800-47581200	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
16	chr2:47574800-47584200	Weak transcription	Stomach Smooth Muscle	stomach
17	chr2:47575000-47581200	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
18	chr2:47575000-47581200	Weak transcription	Stomach Mucosa	stomach
19	chr2:47575000-47586600	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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