Variant report

Variant	rs62141887
Chromosome Location	chr2:58539568-58539569
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 9 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:3)

rs_ID	r²[population]
rs62141883	0.82[EUR][1000 genomes]
rs62141884	0.82[EUR][1000 genomes]
rs72812377	0.87[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:6 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv3457801	chr2:58539181-58539739	Weak transcription ZNF genes & repeats	n/a	n/a	inside rSNPs	n/a
2	esv3457800	chr2:58539233-58539668	Weak transcription ZNF genes & repeats	n/a	n/a	inside rSNPs	n/a
3	esv3457798	chr2:58539238-58539705	Weak transcription ZNF genes & repeats	n/a	n/a	inside rSNPs	n/a
4	esv3457799	chr2:58539250-58539685	ZNF genes & repeats Weak transcription	n/a	n/a	inside rSNPs	n/a
5	esv3457796	chr2:58539290-58539633	ZNF genes & repeats Weak transcription	n/a	n/a	inside rSNPs	n/a
6	esv3457802	chr2:58539304-58539643	ZNF genes & repeats Weak transcription	n/a	n/a	inside rSNPs	n/a

No data

Chromatin state (count:1 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr2:58539400-58540200	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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