Variant report

Variant	rs62142763
Chromosome Location	chr2:60299944-60299945
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 5 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:2)

rs_ID	r²[population]
rs17030159	0.91[ASN][1000 genomes]
rs4672360	0.90[AFR][1000 genomes];0.87[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv869086	chr2:59684680-60676096	Enhancers Weak transcription Bivalent/Poised TSS Active TSS Flanking Active TSS Bivalent Enhancer Genic enhancers Flanking Bivalent TSS/Enh ZNF genes & repeats Strong transcription Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA	12 gene(s)	inside rSNPs	diseases
2	nsv931913	chr2:60026285-61006476	Weak transcription Bivalent/Poised TSS Enhancers Strong transcription Genic enhancers Active TSS Flanking Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	23 gene(s)	inside rSNPs	diseases
3	nsv1002745	chr2:60292007-60364139	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Active TSS Bivalent Enhancer Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:19 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr2:60281400-60306200	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
2	chr2:60292200-60304200	Weak transcription	Pancreas	Pancrea
3	chr2:60292400-60304200	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
4	chr2:60292400-60310200	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
5	chr2:60297600-60310400	Weak transcription	H9 Cell Line	embryonic stem cell
6	chr2:60298600-60300200	Enhancers	Fetal Adrenal Gland	Adrenal Gland
7	chr2:60298600-60300400	Enhancers	Primary hematopoietic stem cells short term culture	blood
8	chr2:60298600-60302800	Enhancers	Fetal Thymus	thymus
9	chr2:60299000-60304000	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
10	chr2:60299200-60300000	Enhancers	Spleen	Spleen
11	chr2:60299200-60301800	Weak transcription	Dnd41	blood
12	chr2:60299200-60304200	Weak transcription	HUES6 Cell Line	embryonic stem cell
13	chr2:60299200-60304200	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
14	chr2:60299400-60300200	Enhancers	Brain Germinal Matrix	brain
15	chr2:60299400-60300600	Weak transcription	Fetal Brain Male	brain
16	chr2:60299800-60300000	Enhancers	H1 Derived Mesenchymal Stem Cells	ES cell derived
17	chr2:60299800-60300000	Enhancers	Left Ventricle	heart
18	chr2:60299800-60300200	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Male	--
19	chr2:60299800-60301200	Weak transcription	Thymus	Thymus

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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