Variant report

Variant	rs62149302
Chromosome Location	chr2:100598849-100598850
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr2:100597919..100600769-chr2:100602279..100603828,2	MCF-7	breast:

Extended variants
information (count: 69 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:66)

rs_ID	r²[population]
rs10165066	0.98[EUR][1000 genomes]
rs10183465	0.99[EUR][1000 genomes]
rs10187195	0.99[EUR][1000 genomes]
rs10189707	0.98[EUR][1000 genomes]
rs10198187	0.99[EUR][1000 genomes]
rs10209198	0.87[EUR][1000 genomes]
rs11887136	0.96[AFR][1000 genomes];0.86[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs11897706	0.95[EUR][1000 genomes]
rs13382597	0.88[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs13383014	0.99[EUR][1000 genomes]
rs13385193	0.88[EUR][1000 genomes]
rs13393937	0.84[EUR][1000 genomes]
rs13405987	0.81[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs13410695	0.99[EUR][1000 genomes]
rs13410884	0.98[EUR][1000 genomes]
rs13413309	0.88[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs13416574	0.98[EUR][1000 genomes]
rs1574207	0.87[EUR][1000 genomes]
rs17023362	0.88[EUR][1000 genomes]
rs17023378	1.00[AFR][1000 genomes];0.83[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs17023391	0.86[EUR][1000 genomes]
rs17023393	0.86[EUR][1000 genomes]
rs17436955	0.89[EUR][1000 genomes]
rs2001722	0.87[EUR][1000 genomes]
rs2309775	0.88[EUR][1000 genomes]
rs4129805	0.88[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs4449188	0.83[EUR][1000 genomes]
rs4641993	0.95[EUR][1000 genomes]
rs55649403	0.85[EUR][1000 genomes]
rs55681051	0.85[EUR][1000 genomes]
rs56332326	0.98[EUR][1000 genomes]
rs57360658	0.96[EUR][1000 genomes]
rs58270548	0.91[EUR][1000 genomes]
rs62147652	0.85[EUR][1000 genomes]
rs62147658	0.85[EUR][1000 genomes]
rs62147659	0.87[EUR][1000 genomes]
rs62149260	0.87[EUR][1000 genomes]
rs62149262	0.87[EUR][1000 genomes]
rs62149263	0.87[EUR][1000 genomes]
rs62149264	0.81[EUR][1000 genomes]
rs62149268	0.87[EUR][1000 genomes]
rs62149270	0.88[EUR][1000 genomes]
rs62149271	0.98[EUR][1000 genomes]
rs62149272	0.88[EUR][1000 genomes]
rs62149296	0.95[AFR][1000 genomes];0.91[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs62149297	0.88[EUR][1000 genomes]
rs62149298	0.89[EUR][1000 genomes]
rs62149299	0.89[EUR][1000 genomes]
rs62149301	0.89[EUR][1000 genomes]
rs6736239	0.85[EUR][1000 genomes]
rs72819146	0.85[EUR][1000 genomes]
rs72819147	0.98[EUR][1000 genomes]
rs72819148	0.87[EUR][1000 genomes]
rs72819149	0.87[EUR][1000 genomes]
rs72819157	0.99[EUR][1000 genomes]
rs72819165	0.85[EUR][1000 genomes]
rs73964375	0.82[AFR][1000 genomes]
rs73964385	0.83[AFR][1000 genomes]
rs73964396	0.85[AFR][1000 genomes]
rs7425132	0.96[EUR][1000 genomes]
rs7573669	0.85[EUR][1000 genomes]
rs7576469	0.99[EUR][1000 genomes]
rs7577040	0.96[EUR][1000 genomes]
rs7606572	0.82[AFR][1000 genomes]
rs9308831	0.89[EUR][1000 genomes]
rs9308832	0.86[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1003343	chr2:100241560-100848900	Weak transcription Enhancers Strong transcription Active TSS Bivalent Enhancer Flanking Active TSS ZNF genes & repeats Genic enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
2	nsv535843	chr2:100241560-100848900	Genic enhancers Enhancers Weak transcription Bivalent Enhancer Active TSS Strong transcription Flanking Active TSS Bivalent/Poised TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
3	nsv1003114	chr2:100480432-100601586	Strong transcription Enhancers Weak transcription Bivalent Enhancer Flanking Active TSS Genic enhancers ZNF genes & repeats Active TSS	Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:39 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr2:100550800-100618200	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
2	chr2:100563200-100625400	Weak transcription	Stomach Smooth Muscle	stomach
3	chr2:100564800-100617000	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
4	chr2:100573800-100599600	Weak transcription	Primary hematopoietic stem cells short term culture	blood
5	chr2:100577400-100618200	Weak transcription	Aorta	Aorta
6	chr2:100577800-100603400	Weak transcription	Colon Smooth Muscle	Colon
7	chr2:100577800-100607400	Weak transcription	Thymus	Thymus
8	chr2:100577800-100623000	Weak transcription	Adipose Nuclei	Adipose
9	chr2:100577800-100623000	Weak transcription	Brain Angular Gyrus	brain
10	chr2:100578000-100616200	Weak transcription	Fetal Thymus	thymus
11	chr2:100582400-100608000	Weak transcription	Fetal Stomach	stomach
12	chr2:100583200-100608000	Strong transcription	Primary B cells from peripheral blood	blood
13	chr2:100587400-100599600	Weak transcription	Ovary	ovary
14	chr2:100587400-100601200	Weak transcription	Left Ventricle	heart
15	chr2:100587400-100623000	Weak transcription	Primary monocytes fromperipheralblood	blood
16	chr2:100587400-100623000	Weak transcription	Spleen	Spleen
17	chr2:100590400-100618000	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood
18	chr2:100591000-100607200	Weak transcription	Brain Germinal Matrix	brain
19	chr2:100591400-100604200	Weak transcription	Fetal Heart	heart
20	chr2:100591400-100605000	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
21	chr2:100592200-100601400	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
22	chr2:100592400-100599000	Weak transcription	NHDF-Ad	bronchial
23	chr2:100592600-100601400	Strong transcription	Primary B cells from cord blood	blood
24	chr2:100592600-100626400	Weak transcription	NH-A	brain
25	chr2:100594600-100623000	Weak transcription	Gastric	stomach
26	chr2:100595800-100601200	Weak transcription	Fetal Brain Female	brain
27	chr2:100596600-100600600	Weak transcription	Fetal Brain Male	brain
28	chr2:100596600-100604600	Weak transcription	Rectal Smooth Muscle	rectum
29	chr2:100597000-100601200	Weak transcription	Osteobl	bone
30	chr2:100597200-100601200	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
31	chr2:100598400-100599200	Genic enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
32	chr2:100598400-100599800	Strong transcription	Dnd41	blood
33	chr2:100598400-100600400	Strong transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
34	chr2:100598600-100599000	Strong transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
35	chr2:100598600-100604600	Weak transcription	Right Atrium	heart
36	chr2:100598600-100623000	Weak transcription	Lung	lung
37	chr2:100598800-100599400	Weak transcription	Fetal Lung	lung
38	chr2:100598800-100600200	Strong transcription	Primary hematopoietic stem cells	blood
39	chr2:100598800-100603600	Weak transcription	Primary T cells from cord blood	blood

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