Variant report

Variant	rs62154508
Chromosome Location	chr2:98397094-98397095
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 21 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:20)

rs_ID	r²[population]
rs55887737	0.93[EUR][1000 genomes]
rs58415781	1.00[EUR][1000 genomes]
rs61363543	0.80[EUR][1000 genomes]
rs62154513	0.84[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs62154516	0.95[EUR][1000 genomes]
rs62154549	0.87[EUR][1000 genomes]
rs62154552	0.84[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs62154553	0.84[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs62154555	0.90[EUR][1000 genomes]
rs62154556	0.90[EUR][1000 genomes]
rs62154558	0.87[EUR][1000 genomes]
rs62156480	0.84[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs62156482	0.80[EUR][1000 genomes]
rs62156507	0.84[AMR][1000 genomes]
rs62156508	0.84[AMR][1000 genomes]
rs62156514	0.95[AMR][1000 genomes]
rs62157630	0.95[EUR][1000 genomes]
rs7420897	0.97[EUR][1000 genomes]
rs7575922	0.87[EUR][1000 genomes]
rs7606272	0.90[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv531382	chr2:98250628-98457616	Weak transcription Enhancers Active TSS Strong transcription Genic enhancers Flanking Active TSS ZNF genes & repeats Bivalent Enhancer Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	28 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:123 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr2:98352200-98398800	Weak transcription	Pancreatic Islets	Pancreatic Islet
2	chr2:98366200-98400000	Strong transcription	Monocytes-CD14+_RO01746	blood
3	chr2:98368600-98413000	Weak transcription	H9 Cell Line	embryonic stem cell
4	chr2:98369600-98398800	Strong transcription	Fetal Muscle Leg	muscle
5	chr2:98370600-98407600	Weak transcription	HUVEC	blood vessel
6	chr2:98371200-98398600	Strong transcription	Primary B cells from cord blood	blood
7	chr2:98377400-98408000	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
8	chr2:98377400-98410600	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
9	chr2:98378600-98421400	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
10	chr2:98381400-98397600	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
11	chr2:98382800-98398600	Weak transcription	Small Intestine	intestine
12	chr2:98382800-98419800	Weak transcription	Primary T killer memory cells from peripheral blood	blood
13	chr2:98383000-98408600	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood
14	chr2:98383200-98408800	Weak transcription	Fetal Brain Male	brain
15	chr2:98383200-98420200	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
16	chr2:98383400-98405600	Weak transcription	A549	lung
17	chr2:98384000-98398800	Weak transcription	Stomach Mucosa	stomach
18	chr2:98385400-98399200	Strong transcription	Primary B cells from peripheral blood	blood
19	chr2:98385800-98398800	Strong transcription	Fetal Stomach	stomach
20	chr2:98386000-98398800	Strong transcription	Ganglion Eminence derived primary cultured neurospheres	brain
21	chr2:98386200-98398000	Strong transcription	Fetal Intestine Large	intestine
22	chr2:98386200-98398800	Strong transcription	Fetal Muscle Trunk	muscle
23	chr2:98386600-98398200	Strong transcription	Skeletal Muscle Female	skeletal muscle
24	chr2:98387800-98408000	Weak transcription	HUES48 Cell Line	embryonic stem cell
25	chr2:98387800-98408000	Weak transcription	HUES64 Cell Line	embryonic stem cell
26	chr2:98387800-98438200	Weak transcription	H1 Cell Line	embryonic stem cell
27	chr2:98388000-98398800	Strong transcription	Fetal Intestine Small	intestine
28	chr2:98388000-98407800	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
29	chr2:98388000-98408600	Weak transcription	iPS-15b Cell Line	embryonic stem cell
30	chr2:98389000-98408200	Weak transcription	NH-A	brain
31	chr2:98390200-98407600	Weak transcription	Psoas Muscle	Psoas
32	chr2:98390200-98408000	Weak transcription	Primary T helper naive cells from peripheral blood	blood
33	chr2:98391000-98402400	Weak transcription	Rectal Smooth Muscle	rectum
34	chr2:98391400-98408000	Weak transcription	Muscle Satellite Cultured Cells	--
35	chr2:98392000-98405000	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
36	chr2:98392200-98404400	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
37	chr2:98392200-98407600	Weak transcription	NHLF	lung
38	chr2:98392200-98409200	Weak transcription	iPS-20b Cell Line	embryonic stem cell
39	chr2:98392400-98397400	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
40	chr2:98392400-98397400	Weak transcription	Primary T cells fromperipheralblood	blood
41	chr2:98392400-98397400	Weak transcription	Esophagus	oesophagus
42	chr2:98392400-98397400	Weak transcription	Pancreas	Pancrea
43	chr2:98392400-98397600	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
44	chr2:98392400-98398200	Weak transcription	Colonic Mucosa	Colon
45	chr2:98392400-98398200	Weak transcription	Right Ventricle	heart
46	chr2:98392400-98398200	Weak transcription	Skeletal Muscle Male	skeletal muscle
47	chr2:98392400-98398400	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
48	chr2:98392400-98398400	Weak transcription	Brain Cingulate Gyrus	brain
49	chr2:98392400-98400400	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
50	chr2:98392400-98401400	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived

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