Variant report

Variant	rs62154930
Chromosome Location	chr2:98816451-98816452
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 38 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:30)

rs_ID	r²[population]
rs17426979	0.93[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs17427034	0.93[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs17427096	0.93[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs17427272	0.93[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs17492872	0.93[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs4132465	0.93[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs4132466	0.86[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs62154928	0.87[EUR][1000 genomes]
rs62154931	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs62154932	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs62154933	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs62154934	0.93[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs62154936	0.85[AMR][1000 genomes];0.80[EUR][1000 genomes]
rs62154937	0.93[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs62154939	0.93[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs62154940	0.93[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs62154941	0.93[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs62154942	0.93[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs62154943	0.93[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs62154944	0.93[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs62154945	0.93[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs62156664	0.93[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs62156665	0.93[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs62156667	0.93[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs62156668	0.93[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs62156669	0.93[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs62156671	0.93[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs62156673	0.93[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs62156674	0.93[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs62156675	0.93[AMR][1000 genomes];0.81[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:8 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv521568	chr2:98403683-98826203	Weak transcription Enhancers Strong transcription Flanking Active TSS ZNF genes & repeats Genic enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS Active TSS Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	diseases
2	nsv1007259	chr2:98429744-98818080	Enhancers Weak transcription Active TSS Bivalent Enhancer Strong transcription Flanking Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent/Poised TSS Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	diseases
3	nsv535832	chr2:98429744-98818080	Weak transcription Flanking Active TSS Enhancers ZNF genes & repeats Strong transcription Bivalent/Poised TSS Bivalent Enhancer Active TSS Flanking Bivalent TSS/Enh Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	diseases
4	nsv1003925	chr2:98442640-98821102	Enhancers Strong transcription Weak transcription Flanking Active TSS Bivalent Enhancer Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Genic enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	diseases
5	nsv1013902	chr2:98454309-98818080	ZNF genes & repeats Weak transcription Bivalent/Poised TSS Active TSS Enhancers Strong transcription Genic enhancers Flanking Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases
6	nsv518056	chr2:98586842-99156296	Weak transcription Enhancers Flanking Active TSS Genic enhancers ZNF genes & repeats Strong transcription Bivalent Enhancer Flanking Bivalent TSS/Enh Active TSS Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	16 gene(s)	inside rSNPs	diseases
7	nsv1004082	chr2:98792256-98967681	Flanking Bivalent TSS/Enh Weak transcription Bivalent Enhancer ZNF genes & repeats Flanking Active TSS Enhancers Active TSS Bivalent/Poised TSS Strong transcription Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases
8	nsv535833	chr2:98792256-98967681	Enhancers Flanking Bivalent TSS/Enh Bivalent Enhancer Weak transcription Bivalent/Poised TSS Flanking Active TSS ZNF genes & repeats Strong transcription Active TSS Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:2 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr2:98811400-98819600	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
2	chr2:98816000-98816600	Enhancers	Fetal Lung	lung

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