Variant report

Variant	rs62157556
Chromosome Location	chr2:128108637-128108638
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr2:128107155..128109690-chr2:128143179..128145881,2	MCF-7	breast:

Variant related genes	Relation type
ENSG00000169967	Chromatin interaction

Extended variants
information (count: 4 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:2)

rs_ID	r²[population]
rs62157554	1.00[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs62160251	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv3459771	chr2:128103479-128114160	Weak transcription Enhancers Flanking Active TSS ZNF genes & repeats Genic enhancers Strong transcription	TF binding region CpG island Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
2	esv3459772	chr2:128103655-128114047	Weak transcription Enhancers ZNF genes & repeats Genic enhancers Strong transcription Flanking Active TSS	TF binding region CpG island Chromatin interactive region	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:76 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr2:128059400-128109600	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
2	chr2:128069000-128117000	Weak transcription	Small Intestine	intestine
3	chr2:128072200-128109600	Weak transcription	Esophagus	oesophagus
4	chr2:128072200-128111800	Weak transcription	K562	blood
5	chr2:128072600-128112000	Weak transcription	NHEK	skin
6	chr2:128077000-128116200	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
7	chr2:128077200-128122800	Weak transcription	Aorta	Aorta
8	chr2:128078600-128109600	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
9	chr2:128079800-128114600	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
10	chr2:128082000-128114600	Weak transcription	Cortex derived primary cultured neurospheres	brain
11	chr2:128083600-128117000	Weak transcription	Brain Anterior Caudate	brain
12	chr2:128086600-128112000	Weak transcription	Primary T killer memory cells from peripheral blood	blood
13	chr2:128088800-128109400	Weak transcription	Right Ventricle	heart
14	chr2:128090800-128112000	Weak transcription	Rectal Smooth Muscle	rectum
15	chr2:128092600-128109400	Weak transcription	Lung	lung
16	chr2:128092600-128122000	Weak transcription	Pancreas	Pancrea
17	chr2:128092800-128109600	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
18	chr2:128093200-128122800	Weak transcription	Fetal Kidney	kidney
19	chr2:128095600-128122000	Weak transcription	Brain Angular Gyrus	brain
20	chr2:128096400-128109000	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
21	chr2:128096400-128109400	Weak transcription	Ovary	ovary
22	chr2:128096400-128112000	Weak transcription	Brain Hippocampus Middle	brain
23	chr2:128096400-128122200	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
24	chr2:128096800-128117800	Weak transcription	Duodenum Mucosa	Duodenum
25	chr2:128096800-128119600	Weak transcription	HSMM	muscle
26	chr2:128099000-128109400	Weak transcription	Right Atrium	heart
27	chr2:128100000-128112000	Weak transcription	Fetal Lung	lung
28	chr2:128100200-128109600	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
29	chr2:128100200-128110000	Weak transcription	Fetal Intestine Large	intestine
30	chr2:128100200-128119600	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
31	chr2:128100400-128109400	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
32	chr2:128100400-128109400	Weak transcription	Primary T cells fromperipheralblood	blood
33	chr2:128100400-128118400	Weak transcription	Rectal Mucosa Donor 31	rectum
34	chr2:128100600-128119800	Weak transcription	NHDF-Ad	bronchial
35	chr2:128101600-128116400	Weak transcription	Fetal Thymus	thymus
36	chr2:128101600-128117800	Weak transcription	Rectal Mucosa Donor 29	rectum
37	chr2:128102600-128109400	Weak transcription	Left Ventricle	heart
38	chr2:128102600-128122400	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
39	chr2:128102800-128109400	Weak transcription	Fetal Intestine Small	intestine
40	chr2:128103600-128109800	Enhancers	Primary T helper cells PMA-I stimulated	--
41	chr2:128103800-128111800	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
42	chr2:128104400-128109000	Enhancers	Primary T helper cells fromperipheralblood	blood
43	chr2:128104600-128119400	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
44	chr2:128105400-128109800	Enhancers	Primary neutrophils fromperipheralblood	blood
45	chr2:128105600-128109200	Weak transcription	HepG2	liver
46	chr2:128105600-128127400	Weak transcription	Primary hematopoietic stem cells	blood
47	chr2:128106000-128109600	Weak transcription	Skeletal Muscle Female	skeletal muscle
48	chr2:128106200-128109400	Enhancers	Monocytes-CD14+_RO01746	blood
49	chr2:128106400-128111800	Weak transcription	Primary T helper 17 cells PMA-I stimulated	--
50	chr2:128106400-128111800	Weak transcription	A549	lung

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