Variant report

Variant	rs62159145
Chromosome Location	chr2:110744420-110744421
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	MYC	chr2:110744326-110744751	MCF-7	breast:	n/a	n/a
2	MYC	chr2:110744276-110744801	MCF-7	breast:	n/a	n/a
3	POLR2A	chr2:110744192-110745136	H1-hESC	embryonic stem cell:	n/a	n/a
4	POLR2A	chr2:110743930-110746098	A549	lung:	n/a	n/a
5	JUND	chr2:110744008-110744936	A549	lung:	n/a	n/a
6	CTCF	chr2:110744382-110744494	GM12892	blood:	n/a	chr2:110744453-110744466
7	POLR2A	chr2:110743857-110746820	PANC-1	pancreas:	n/a	n/a
8	CTCF	chr2:110744394-110744468	ProgFib	skin:	n/a	chr2:110744453-110744466
9	POLR2A	chr2:110744239-110744813	GM12892	blood:	n/a	n/a
10	CTCF	chr2:110744379-110744604	Kidney_OC	kidney:	n/a	chr2:110744453-110744466
11	CTCF	chr2:110744337-110744552	MCF-7	breast:	n/a	chr2:110744453-110744466
12	POLR2A	chr2:110743848-110745709	Hela-S3	cervix:	n/a	n/a
13	CTCF	chr2:110744341-110744551	Hela-S3	cervix:	n/a	chr2:110744453-110744466
14	SP1	chr2:110743914-110744911	A549	lung:	n/a	chr2:110744501-110744514 chr2:110744115-110744124 chr2:110744111-110744124 chr2:110744115-110744125 chr2:110744116-110744125 chr2:110744111-110744125 chr2:110744114-110744126 chr2:110744114-110744126
15	NR3C1	chr2:110744012-110744817	A549	lung:	n/a	n/a
16	POLR2A	chr2:110743903-110746004	Hela-S3	cervix:	n/a	n/a
17	TCF3	chr2:110744206-110744583	GM12878	blood:	n/a	n/a
18	TEAD4	chr2:110744320-110744834	H1-hESC	embryonic stem cell:	n/a	n/a
19	CTCF	chr2:110744379-110744502	MCF-7	breast:	n/a	chr2:110744453-110744466
20	CTCF	chr2:110744310-110744724	NHEK	skin:	n/a	chr2:110744453-110744466
21	POLR2A	chr2:110743931-110746037	A549	lung:	n/a	n/a
22	POLR2A	chr2:110744004-110744831	MCF-7	breast:	n/a	n/a
23	TAF1	chr2:110743994-110744899	A549	lung:	n/a	n/a
24	TAF1	chr2:110744250-110744823	H1-hESC	embryonic stem cell:	n/a	n/a
25	CTCF	chr2:110744420-110744520	GM19238	blood:	n/a	chr2:110744453-110744466
26	POLR2A	chr2:110743891-110745333	HUVEC	blood vessel:	n/a	n/a
27	POLR2A	chr2:110744211-110744757	H1-hESC	embryonic stem cell:	n/a	n/a
28	MYC	chr2:110744335-110744759	Hela-S3	cervix:	n/a	n/a
29	FOXA2	chr2:110744355-110744942	A549	lung:	n/a	n/a
30	YY1	chr2:110744054-110744767	A549	lung:	n/a	chr2:110744443-110744457
31	POLR2A	chr2:110743993-110745758	MCF-7	breast:	n/a	n/a
32	POLR2A	chr2:110743954-110746023	A549	lung:	n/a	n/a
33	CTCF	chr2:110744249-110744647	A549	lung:	n/a	chr2:110744453-110744466
34	POLR2A	chr2:110743902-110745932	Hela-S3	cervix:	n/a	n/a
35	POLR2A	chr2:110743897-110746858	PANC-1	pancreas:	n/a	n/a
36	CTCF	chr2:110744299-110744539	A549	lung:	n/a	chr2:110744453-110744466
37	POLR2A	chr2:110744007-110746084	H1-hESC	embryonic stem cell:	n/a	n/a
38	POLR2A	chr2:110744154-110744807	H1-hESC	embryonic stem cell:	n/a	n/a
39	CTCF	chr2:110744324-110744704	MCF-7	breast:	n/a	chr2:110744453-110744466
40	NR3C1	chr2:110744179-110744883	A549	lung:	n/a	n/a
41	SP1	chr2:110743901-110744816	A549	lung:	n/a	chr2:110744501-110744514 chr2:110744115-110744124 chr2:110744111-110744124 chr2:110744115-110744125 chr2:110744116-110744125 chr2:110744111-110744125 chr2:110744114-110744126 chr2:110744114-110744126
42	MYC	chr2:110744382-110744691	MCF-7	breast:	n/a	n/a
43	CTCF	chr2:110744401-110744529	GM12891	blood:	n/a	chr2:110744453-110744466
44	POLR2A	chr2:110744083-110744798	MCF-7	breast:	n/a	n/a
45	TAF1	chr2:110744021-110744795	Hela-S3	cervix:	n/a	n/a
46	POLR2A	chr2:110744013-110744767	A549	lung:	n/a	n/a
47	TAF1	chr2:110744090-110744744	Hela-S3	cervix:	n/a	n/a
48	USF1	chr2:110744113-110744744	A549	lung:	n/a	n/a
49	CTCF	chr2:110744356-110744675	MCF-7	breast:	n/a	chr2:110744453-110744466
50	POLR2A	chr2:110743955-110746017	A549	lung:	n/a	n/a

Variant related genes	Relation type
LINC01123	TF binding region

Extended variants
information (count: 46 )
Associated
traits (count: 0)

Variant overlapped rSNPs/rCNVs (count:46 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1011456	chr2:110290958-110980402	Active TSS Weak transcription Enhancers Flanking Active TSS Genic enhancers ZNF genes & repeats Strong transcription Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	60 gene(s)	inside rSNPs	diseases
2	nsv535861	chr2:110290958-110980402	Weak transcription Active TSS Flanking Active TSS Strong transcription Enhancers Bivalent Enhancer ZNF genes & repeats Flanking Bivalent TSS/Enh Genic enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	60 gene(s)	inside rSNPs	diseases
3	nsv1009367	chr2:110349178-110863354	Enhancers Bivalent/Poised TSS Flanking Active TSS Weak transcription Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent Enhancer Strong transcription Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	36 gene(s)	inside rSNPs	diseases
4	nsv491837	chr2:110381297-110964737	Strong transcription Enhancers Weak transcription Flanking Active TSS Active TSS ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	26 gene(s)	inside rSNPs	diseases
5	nsv999552	chr2:110396395-110978224	Enhancers Active TSS Weak transcription Strong transcription Flanking Bivalent TSS/Enh Flanking Active TSS Bivalent/Poised TSS Transcr. at gene 5' and 3' Bivalent Enhancer Genic enhancers ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	42 gene(s)	inside rSNPs	diseases
6	esv2751812	chr2:110457214-110980346	Enhancers Active TSS Flanking Active TSS Bivalent/Poised TSS Bivalent Enhancer Weak transcription Flanking Bivalent TSS/Enh Strong transcription Genic enhancers Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	42 gene(s)	inside rSNPs	diseases
7	nsv1011653	chr2:110461521-110978224	Flanking Active TSS Enhancers Weak transcription Active TSS Flanking Bivalent TSS/Enh Strong transcription Bivalent Enhancer Genic enhancers Bivalent/Poised TSS ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	37 gene(s)	inside rSNPs	diseases
8	nsv874781	chr2:110463288-110804164	Active TSS Flanking Active TSS Enhancers Weak transcription Bivalent/Poised TSS Bivalent Enhancer ZNF genes & repeats Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	11 gene(s)	inside rSNPs	diseases
9	nsv874782	chr2:110463288-111334482	Flanking Active TSS Active TSS Enhancers Weak transcription Strong transcription Bivalent Enhancer Genic enhancers Bivalent/Poised TSS ZNF genes & repeats Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	55 gene(s)	inside rSNPs	diseases
10	nsv874783	chr2:110498943-110886142	Weak transcription Active TSS Enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh Flanking Active TSS Bivalent/Poised TSS Genic enhancers Strong transcription Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	17 gene(s)	inside rSNPs	diseases
11	nsv1013901	chr2:110501500-110983669	Enhancers Weak transcription Flanking Active TSS Bivalent/Poised TSS Strong transcription Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	36 gene(s)	inside rSNPs	diseases
12	nsv1003103	chr2:110504334-111084885	Active TSS Bivalent Enhancer Enhancers Weak transcription Flanking Active TSS Bivalent/Poised TSS Strong transcription Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	39 gene(s)	inside rSNPs	diseases
13	nsv874784	chr2:110524250-110829655	Enhancers Weak transcription Active TSS	TF binding region CpG island lncRNA miRNA miRNA target site	9 gene(s)	inside rSNPs	diseases
14	nsv874785	chr2:110524250-110843108	Enhancers Weak transcription Active TSS	TF binding region CpG island lncRNA miRNA miRNA target site	9 gene(s)	inside rSNPs	diseases
15	nsv874786	chr2:110524250-110857243	Enhancers Strong transcription Weak transcription Active TSS Flanking Active TSS Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	10 gene(s)	inside rSNPs	diseases
16	nsv874787	chr2:110524250-111334482	Enhancers Genic enhancers Flanking Active TSS ZNF genes & repeats Weak transcription Flanking Bivalent TSS/Enh Active TSS Bivalent/Poised TSS Strong transcription Transcr. at gene 5' and 3' Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	52 gene(s)	inside rSNPs	diseases
17	nsv469649	chr2:110663085-110840236	Enhancers Weak transcription Active TSS	TF binding region CpG island lncRNA miRNA	7 gene(s)	inside rSNPs	diseases
18	nsv482634	chr2:110663085-110840236	Enhancers Active TSS Weak transcription	TF binding region CpG island lncRNA miRNA	7 gene(s)	inside rSNPs	diseases
19	esv1810054	chr2:110684637-110744543	Inactive region	TF binding region CpG island	3 gene(s)	inside rSNPs	diseases
20	esv2757824	chr2:110693356-111123649	Strong transcription Genic enhancers Weak transcription Enhancers Bivalent Enhancer Active TSS Bivalent/Poised TSS ZNF genes & repeats Flanking Active TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA	40 gene(s)	inside rSNPs	diseases
21	esv2759082	chr2:110693356-111123649	Enhancers Flanking Active TSS Weak transcription Bivalent/Poised TSS Active TSS Bivalent Enhancer Strong transcription Flanking Bivalent TSS/Enh Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA	40 gene(s)	inside rSNPs	diseases
22	nsv532271	chr2:110694195-111209736	Weak transcription Flanking Active TSS Enhancers Bivalent Enhancer Bivalent/Poised TSS Strong transcription Flanking Bivalent TSS/Enh Active TSS ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA	46 gene(s)	inside rSNPs	diseases
23	nsv582654	chr2:110695564-110983320	Flanking Bivalent TSS/Enh Active TSS Weak transcription Transcr. at gene 5' and 3' Enhancers Flanking Active TSS Genic enhancers Strong transcription Bivalent Enhancer Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA	34 gene(s)	inside rSNPs	diseases
24	nsv917407	chr2:110704031-110983669	Weak transcription Active TSS Enhancers Flanking Active TSS Strong transcription Genic enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA	34 gene(s)	inside rSNPs	diseases
25	nsv918119	chr2:110704031-111084885	Enhancers Active TSS Weak transcription ZNF genes & repeats Flanking Active TSS Bivalent/Poised TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent Enhancer Strong transcription Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA miRNA	37 gene(s)	inside rSNPs	diseases
26	nsv998768	chr2:110704032-110973315	Strong transcription Flanking Active TSS Weak transcription Enhancers Active TSS Bivalent/Poised TSS Bivalent Enhancer ZNF genes & repeats Flanking Bivalent TSS/Enh Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA	27 gene(s)	inside rSNPs	diseases
27	nsv1010477	chr2:110704032-110983669	Bivalent Enhancer Active TSS Flanking Active TSS Enhancers ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent/Poised TSS Weak transcription Genic enhancers Strong transcription Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA	34 gene(s)	inside rSNPs	diseases
28	nsv1003206	chr2:110704032-111066273	Weak transcription Enhancers Active TSS Flanking Active TSS Strong transcription Flanking Bivalent TSS/Enh Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA	37 gene(s)	inside rSNPs	diseases
29	nsv1010763	chr2:110704032-111084885	Enhancers Weak transcription Active TSS ZNF genes & repeats Bivalent Enhancer Flanking Active TSS Strong transcription Flanking Bivalent TSS/Enh Bivalent/Poised TSS Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA	37 gene(s)	inside rSNPs	diseases
30	esv2763637	chr2:110704032-111169128	ZNF genes & repeats Flanking Active TSS Weak transcription Bivalent/Poised TSS Enhancers Active TSS Bivalent Enhancer Strong transcription Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA miRNA	44 gene(s)	inside rSNPs	diseases
31	nsv1010870	chr2:110704032-111400650	Enhancers Active TSS Flanking Active TSS Weak transcription Flanking Bivalent TSS/Enh Bivalent/Poised TSS ZNF genes & repeats Strong transcription Genic enhancers Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	53 gene(s)	inside rSNPs	diseases
32	nsv874788	chr2:110706146-111334482	Active TSS Weak transcription Flanking Bivalent TSS/Enh Flanking Active TSS Genic enhancers Enhancers Bivalent/Poised TSS Bivalent Enhancer Transcr. at gene 5' and 3' Strong transcription ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	50 gene(s)	inside rSNPs	diseases
33	nsv1011659	chr2:110710762-110983669	Active TSS Enhancers Strong transcription Bivalent Enhancer Weak transcription Genic enhancers Flanking Active TSS Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA	34 gene(s)	inside rSNPs	diseases
34	nsv998349	chr2:110710762-111084885	Active TSS Weak transcription Enhancers Transcr. at gene 5' and 3' Flanking Active TSS Bivalent Enhancer Strong transcription Flanking Bivalent TSS/Enh Bivalent/Poised TSS ZNF genes & repeats Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA miRNA	37 gene(s)	inside rSNPs	diseases
35	nsv1005578	chr2:110717078-111084885	Weak transcription Active TSS Strong transcription Flanking Active TSS Enhancers Transcr. at gene 5' and 3' Bivalent Enhancer ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent/Poised TSS Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA miRNA	37 gene(s)	inside rSNPs	diseases
36	nsv874789	chr2:110727715-110834186	Weak transcription Enhancers Active TSS	TF binding region CpG island lncRNA miRNA	6 gene(s)	inside rSNPs	diseases
37	nsv874790	chr2:110727715-111334482	Weak transcription Enhancers Flanking Active TSS Active TSS Genic enhancers Strong transcription ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent/Poised TSS Transcr. at gene 5' and 3' Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	49 gene(s)	inside rSNPs	diseases
38	esv2830158	chr2:110727715-111419426	Enhancers Active TSS Bivalent/Poised TSS Weak transcription Flanking Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Strong transcription Genic enhancers Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	52 gene(s)	inside rSNPs	diseases
39	nsv994984	chr2:110732632-110964737	Enhancers Weak transcription Strong transcription Flanking Active TSS ZNF genes & repeats Genic enhancers Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS Transcr. at gene 5' and 3' Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA	15 gene(s)	inside rSNPs	diseases
40	nsv869158	chr2:110732632-111334482	Weak transcription Bivalent Enhancer Genic enhancers Enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh Flanking Active TSS ZNF genes & repeats Active TSS Strong transcription Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	49 gene(s)	inside rSNPs	diseases
41	nsv915752	chr2:110732649-110964775	Strong transcription Weak transcription Active TSS Flanking Active TSS Enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA	15 gene(s)	inside rSNPs	diseases
42	nsv874791	chr2:110732676-110829655	Enhancers Weak transcription Active TSS	TF binding region CpG island lncRNA miRNA	6 gene(s)	inside rSNPs	diseases
43	nsv874792	chr2:110732676-110871665	Enhancers Active TSS Bivalent/Poised TSS Flanking Active TSS Weak transcription Strong transcription Genic enhancers Bivalent Enhancer Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA	9 gene(s)	inside rSNPs	diseases
44	nsv874793	chr2:110732676-111334482	Enhancers Active TSS Weak transcription Flanking Active TSS Flanking Bivalent TSS/Enh Strong transcription Genic enhancers Bivalent Enhancer Bivalent/Poised TSS Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	49 gene(s)	inside rSNPs	diseases
45	nsv834329	chr2:110733609-110892184	Bivalent Enhancer Enhancers Weak transcription Strong transcription Active TSS Flanking Active TSS Flanking Bivalent TSS/Enh Genic enhancers Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA	13 gene(s)	inside rSNPs	diseases
46	nsv961481	chr2:110733765-110751303	Active TSS	TF binding region lncRNA	3 gene(s)	inside rSNPs	diseases

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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