Variant report

Variant	rs62166769
Chromosome Location	chr2:85812784-85812785
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr2:85764476..85768967-chr2:85811222..85814196,4	MCF-7	breast:
2	chr2:85764082..85769632-chr2:85809376..85814783,9	K562	blood:
3	chr11:62609099..62611153-chr2:85810884..85812962,2	K562	blood:
4	chr2:85764767..85768368-chr2:85809376..85813309,5	K562	blood:
5	chr2:85788681..85792834-chr2:85809475..85813834,4	MCF-7	breast:

Variant related genes	Relation type
ENSG00000168906	Chromatin interaction
ENSG00000118640	Chromatin interaction
ENSG00000133316	Chromatin interaction

Extended variants
information (count: 1 )
Associated
traits (count: 5 )

rSNPs within LD-proxies of this variant (count:1)

rs_ID	r²[population]
rs1374370	0.81[ASN][1000 genomes]

mRNA abundance (count:5)

SNP	Gene	Cis/trans	Tissue	Source
rs62166769	GGCX	Cis_1M	lymphoblastoid	RTeQTL
rs62166769	VAMP8	cis	multi-tissue	Pritchard
rs62166769	VAMP8	cis	Esophagus Mucosa	GTEx
rs62166769	VAMP8	Cis_1M	lymphoblastoid	RTeQTL
rs62166769	GGCX	cis	Artery Tibial	GTEx

Chromatin state (count:114 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr2:85810800-85813000	Flanking Active TSS	Dnd41	blood
2	chr2:85810800-85813200	Flanking Active TSS	Foreskin Fibroblast Primary Cells skin01	Skin
3	chr2:85811000-85813000	Flanking Active TSS	Primary hematopoietic stem cells G-CSF-mobilized Female	--
4	chr2:85811000-85813200	Flanking Active TSS	IMR90 fetal lung fibroblasts Cell Line	lung
5	chr2:85811000-85813200	Flanking Active TSS	Primary neutrophils fromperipheralblood	blood
6	chr2:85811200-85813000	Flanking Active TSS	Liver	Liver
7	chr2:85811600-85812800	Flanking Active TSS	Primary hematopoietic stem cells	blood
8	chr2:85811600-85812800	Flanking Active TSS	Colonic Mucosa	Colon
9	chr2:85811600-85813000	Enhancers	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
10	chr2:85811600-85813000	Flanking Active TSS	Foreskin Fibroblast Primary Cells skin02	Skin
11	chr2:85811600-85813000	Flanking Active TSS	NH-A	brain
12	chr2:85811600-85813200	Flanking Active TSS	Primary hematopoietic stem cells G-CSF-mobilized Male	--
13	chr2:85811600-85813400	Enhancers	HMEC	breast
14	chr2:85811800-85812800	Flanking Active TSS	Primary T helper naive cells fromperipheralblood	blood
15	chr2:85811800-85812800	Flanking Active TSS	Primary T helper cells fromperipheralblood	blood
16	chr2:85811800-85812800	Flanking Active TSS	Primary T regulatory cells fromperipheralblood	blood
17	chr2:85811800-85812800	Flanking Active TSS	Primary T killer naive cells fromperipheralblood	blood
18	chr2:85811800-85812800	Flanking Active TSS	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
19	chr2:85811800-85812800	Flanking Active TSS	Brain Hippocampus Middle	brain
20	chr2:85811800-85812800	Flanking Active TSS	Colon Smooth Muscle	Colon
21	chr2:85811800-85812800	Flanking Active TSS	Left Ventricle	heart
22	chr2:85811800-85812800	Flanking Active TSS	Stomach Smooth Muscle	stomach
23	chr2:85811800-85812800	Flanking Active TSS	Osteobl	bone
24	chr2:85811800-85813000	Enhancers	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
25	chr2:85811800-85813000	Flanking Active TSS	Primary monocytes fromperipheralblood	blood
26	chr2:85811800-85813000	Flanking Active TSS	Primary T cells from cord blood	blood
27	chr2:85811800-85813000	Flanking Active TSS	Primary T helper cells PMA-I stimulated	--
28	chr2:85811800-85813000	Flanking Active TSS	Duodenum Mucosa	Duodenum
29	chr2:85811800-85813000	Enhancers	Placenta Amnion	Placenta Amnion
30	chr2:85811800-85813000	Flanking Active TSS	Rectal Mucosa Donor 31	rectum
31	chr2:85811800-85813000	Flanking Active TSS	Right Ventricle	heart
32	chr2:85811800-85813000	Flanking Active TSS	GM12878-XiMat	blood
33	chr2:85811800-85813000	Flanking Active TSS	HUVEC	blood vessel
34	chr2:85811800-85813200	Flanking Active TSS	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
35	chr2:85811800-85813200	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
36	chr2:85811800-85813200	Flanking Active TSS	Muscle Satellite Cultured Cells	--
37	chr2:85811800-85813200	Flanking Active TSS	Adipose Nuclei	Adipose
38	chr2:85811800-85813200	Flanking Active TSS	Skeletal Muscle Female	skeletal muscle
39	chr2:85811800-85813400	Flanking Active TSS	Fetal Adrenal Gland	Adrenal Gland
40	chr2:85811800-85813400	Flanking Active TSS	Rectal Mucosa Donor 29	rectum
41	chr2:85811800-85813400	Flanking Active TSS	Skeletal Muscle Male	skeletal muscle
42	chr2:85811800-85813400	Enhancers	A549	lung
43	chr2:85811800-85813400	Flanking Active TSS	Monocytes-CD14+_RO01746	blood
44	chr2:85811800-85814000	Enhancers	H1 Derived Mesenchymal Stem Cells	ES cell derived
45	chr2:85812000-85812800	Enhancers	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
46	chr2:85812000-85812800	Flanking Active TSS	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
47	chr2:85812000-85812800	Flanking Active TSS	Primary T helper naive cells from peripheral blood	blood
48	chr2:85812000-85812800	Flanking Active TSS	Primary T helper 17 cells PMA-I stimulated	--
49	chr2:85812000-85812800	Flanking Active TSS	Brain Anterior Caudate	brain
50	chr2:85812000-85812800	Flanking Active TSS	Hela-S3	cervix

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