Variant report

Variant	rs62169475
Chromosome Location	chr2:148589641-148589642
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr2:148585684..148587286-chr2:148589019..148590941,2	K562	blood:
2	chr2:148588549..148591350-chr2:148595226..148596870,2	K562	blood:
3	chr2:148589254..148592247-chr2:148597949..148601498,4	K562	blood:

Extended variants
information (count: 29 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:25)

rs_ID	r²[population]
rs1424941	0.82[ASN][1000 genomes]
rs1469211	0.82[ASN][1000 genomes]
rs17691284	0.81[AFR][1000 genomes];0.85[ASN][1000 genomes]
rs17741344	0.81[ASN][1000 genomes]
rs17741978	0.81[AFR][1000 genomes];0.85[ASN][1000 genomes]
rs17742342	0.81[AFR][1000 genomes];0.85[ASN][1000 genomes]
rs17743157	0.82[ASN][1000 genomes]
rs3754541	0.82[ASN][1000 genomes]
rs62169472	0.81[AFR][1000 genomes];0.88[ASN][1000 genomes]
rs62169473	0.88[ASN][1000 genomes]
rs62169474	0.81[AFR][1000 genomes];0.88[ASN][1000 genomes]
rs62169477	0.81[AFR][1000 genomes];0.88[ASN][1000 genomes]
rs62169478	0.88[ASN][1000 genomes]
rs62169479	0.86[ASN][1000 genomes]
rs62169480	0.81[AFR][1000 genomes];0.88[ASN][1000 genomes]
rs62169481	0.81[AFR][1000 genomes];0.82[ASN][1000 genomes]
rs62169482	0.81[AFR][1000 genomes];0.85[ASN][1000 genomes]
rs62169483	0.81[AFR][1000 genomes];0.85[ASN][1000 genomes]
rs6747792	0.81[AFR][1000 genomes];0.88[ASN][1000 genomes]
rs721344	0.83[ASN][1000 genomes]
rs730356	0.84[ASN][1000 genomes]
rs7560502	0.81[AFR][1000 genomes];0.85[ASN][1000 genomes]
rs7595052	0.85[ASN][1000 genomes]
rs929940	0.81[AFR][1000 genomes];0.85[ASN][1000 genomes]
rs981814	0.82[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv875275	chr2:148166428-148711242	Enhancers Weak transcription Flanking Active TSS Strong transcription Bivalent Enhancer Active TSS Genic enhancers Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	14 gene(s)	inside rSNPs	diseases
2	nsv916286	chr2:148438001-148977722	Enhancers Weak transcription Bivalent/Poised TSS Active TSS Flanking Active TSS ZNF genes & repeats Strong transcription Genic enhancers Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	16 gene(s)	inside rSNPs	diseases
3	nsv529388	chr2:148471340-148934846	Enhancers Weak transcription Strong transcription Flanking Active TSS Active TSS ZNF genes & repeats Bivalent Enhancer Bivalent/Poised TSS Transcr. at gene 5' and 3' Genic enhancers Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	16 gene(s)	inside rSNPs	diseases
4	esv3392562	chr2:148476961-148843061	Strong transcription Enhancers Weak transcription Flanking Active TSS Active TSS ZNF genes & repeats Bivalent Enhancer Genic enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	15 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:1 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr2:148584400-148595000	Weak transcription	Monocytes-CD14+_RO01746	blood

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