Variant report

Variant	rs62170867
Chromosome Location	chr2:77235200-77235201
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 9 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:4)

rs_ID	r²[population]
rs62170333	1.00[AFR][1000 genomes]
rs62170335	1.00[AFR][1000 genomes]
rs62170338	1.00[AFR][1000 genomes]
rs62172169	1.00[AFR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv834266	chr2:77120236-77287504	Enhancers Active TSS Weak transcription ZNF genes & repeats Flanking Active TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
2	nsv949670	chr2:77125218-77712607	Weak transcription Enhancers Bivalent Enhancer Strong transcription Active TSS Flanking Active TSS Transcr. at gene 5' and 3' ZNF genes & repeats Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
3	nsv519950	chr2:77213103-77256291	Enhancers Flanking Active TSS Weak transcription Bivalent Enhancer ZNF genes & repeats Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
4	nsv997284	chr2:77233426-77303198	Weak transcription Enhancers Flanking Active TSS ZNF genes & repeats Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
5	nsv1007408	chr2:77235194-77255152	Weak transcription Enhancers Flanking Active TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:29 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr2:77231600-77235800	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
2	chr2:77232000-77245600	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
3	chr2:77232600-77238200	Enhancers	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
4	chr2:77232800-77238000	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
5	chr2:77233600-77235200	Enhancers	ES-I3 Cell Line	embryonic stem cell
6	chr2:77233600-77237200	Enhancers	HUES64 Cell Line	embryonic stem cell
7	chr2:77233800-77235800	Enhancers	HUES6 Cell Line	embryonic stem cell
8	chr2:77233800-77236000	Enhancers	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
9	chr2:77233800-77236800	Enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin
10	chr2:77233800-77237000	Enhancers	Cortex derived primary cultured neurospheres	brain
11	chr2:77233800-77237000	Enhancers	HUVEC	blood vessel
12	chr2:77234000-77235600	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
13	chr2:77234000-77235800	Weak transcription	H1 Cell Line	embryonic stem cell
14	chr2:77234000-77237600	Enhancers	HUES48 Cell Line	embryonic stem cell
15	chr2:77234200-77239000	Weak transcription	H9 Cell Line	embryonic stem cell
16	chr2:77234400-77236200	Enhancers	Brain Germinal Matrix	brain
17	chr2:77234400-77238200	Enhancers	iPS-18 Cell Line	embryonic stem cell
18	chr2:77234600-77235200	Enhancers	Brain Anterior Caudate	brain
19	chr2:77234600-77237000	Enhancers	ES-WA7 Cell Line	embryonic stem cell
20	chr2:77234600-77237600	Enhancers	iPS-15b Cell Line	embryonic stem cell
21	chr2:77234800-77235600	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
22	chr2:77234800-77235800	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
23	chr2:77234800-77236000	Enhancers	iPS-20b Cell Line	embryonic stem cell
24	chr2:77234800-77236600	Enhancers	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
25	chr2:77235000-77235200	Flanking Active TSS	Ganglion Eminence derived primary cultured neurospheres	brain
26	chr2:77235000-77237800	Enhancers	Fetal Brain Male	brain
27	chr2:77235200-77235600	Weak transcription	ES-I3 Cell Line	embryonic stem cell
28	chr2:77235200-77235600	Weak transcription	Brain Anterior Caudate	brain
29	chr2:77235200-77236800	Enhancers	Ganglion Eminence derived primary cultured neurospheres	brain

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