The 2.0 version of rSNPBase

Variant report

Variant rs62171780
Chromosome Location chr2:114634013-114634014
allele C/T
Outlinks Ensembl   UCSC
Chromatin state (count:72 , 50 per page) page: 1 2
No. Chromosome Location Chromatin state Cell line Tissue
1 chr2:114621200-114639600 Weak transcription GM12878-XiMat blood
2 chr2:114621400-114638400 Weak transcription Primary hematopoietic stem cells short term culture blood
3 chr2:114626400-114635000 Weak transcription Primary B cells from cord blood blood
4 chr2:114626600-114634200 Weak transcription Thymus Thymus
5 chr2:114626600-114634400 Weak transcription Pancreas Pancrea
6 chr2:114626800-114635000 Weak transcription Primary B cells from peripheral blood blood
7 chr2:114630200-114634200 Weak transcription NHLF lung
8 chr2:114630200-114634600 Weak transcription Foreskin Fibroblast Primary Cells skin02 Skin
9 chr2:114630200-114635000 Weak transcription HSMM muscle
10 chr2:114630200-114635200 Weak transcription IMR90 fetal lung fibroblasts Cell Line lung
11 chr2:114630400-114634200 Weak transcription Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells embryonic stem cell
12 chr2:114630400-114635000 Weak transcription Foreskin Fibroblast Primary Cells skin01 Skin
13 chr2:114630400-114635000 Weak transcription HSMMtube muscle
14 chr2:114630400-114635000 Weak transcription NHDF-Ad bronchial
15 chr2:114630400-114635200 Weak transcription Mesenchymal Stem Cell Derived Adipocyte Cultured Cells ES cell derived
16 chr2:114630400-114635200 Weak transcription Osteobl bone
17 chr2:114630400-114635400 Weak transcription Bone Marrow Derived Cultured Mesenchymal Stem Cells Bone marrow
18 chr2:114631400-114635200 Weak transcription Small Intestine intestine
19 chr2:114631400-114644000 Weak transcription Spleen Spleen
20 chr2:114631600-114636400 Weak transcription Left Ventricle heart
21 chr2:114631800-114634400 Weak transcription NH-A brain
22 chr2:114631800-114635400 Weak transcription Adipose Nuclei Adipose
23 chr2:114631800-114639000 Weak transcription hESC Derived CD56+ Mesoderm Cultured Cells ES cell derived
24 chr2:114632000-114634200 Weak transcription Adipose Derived Mesenchymal Stem Cell Cultured Cells ES cell derived
25 chr2:114632000-114634200 Weak transcription Foreskin Keratinocyte Primary Cells skin02 Skin
26 chr2:114632000-114634200 Weak transcription Hela-S3 cervix
27 chr2:114632000-114635200 Weak transcription Muscle Satellite Cultured Cells --
28 chr2:114632000-114635600 Weak transcription Foreskin Melanocyte Primary Cells skin03 Skin
29 chr2:114632400-114635400 Weak transcription HUVEC blood vessel
30 chr2:114632600-114636400 Weak transcription H1 Derived Mesenchymal Stem Cells ES cell derived
31 chr2:114632800-114634200 Enhancers Primary T helper cells fromperipheralblood blood
32 chr2:114633200-114634200 Enhancers Fetal Thymus thymus
33 chr2:114633400-114634200 Enhancers Primary T helper naive cells fromperipheralblood blood
34 chr2:114633400-114634800 Weak transcription Primary monocytes fromperipheralblood blood
35 chr2:114633400-114636000 Enhancers Primary T helper memory cells from peripheral blood 1 blood
36 chr2:114633400-114636400 Enhancers Primary T helper memory cells from peripheral blood 2 blood
37 chr2:114633600-114634200 Enhancers Dnd41 blood
38 chr2:114633600-114636000 Enhancers Primary T killer naive cells fromperipheralblood blood
39 chr2:114633800-114634200 Enhancers Colonic Mucosa Colon
40 chr2:114633800-114634200 Enhancers Rectal Mucosa Donor 29 rectum
41 chr2:114633800-114634400 Flanking Active TSS Primary T helper cells PMA-I stimulated --
42 chr2:114633800-114634400 Enhancers Sigmoid Colon Sigmoid Colon
43 chr2:114633800-114634600 Enhancers Primary Natural Killer cells fromperipheralblood blood
44 chr2:114633800-114634600 Enhancers Rectal Mucosa Donor 31 rectum
45 chr2:114633800-114635000 Weak transcription Monocytes-CD14+_RO01746 blood
46 chr2:114633800-114635600 Enhancers Breast variant Human Mammary Epithelial Cells (vHMEC) Breast
47 chr2:114633800-114636000 Enhancers Primary T cells fromperipheralblood blood
48 chr2:114633800-114636000 Enhancers Primary T helper 17 cells PMA-I stimulated --
49 chr2:114633800-114636200 Enhancers Primary T cells effector/memory enriched fromperipheralblood blood
50 chr2:114633800-114636800 Enhancers Fetal Intestine Large intestine

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Last update: Aug 31, 2015