Variant report

Variant	rs62171891
Chromosome Location	chr2:187697353-187697354
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr2:187697207..187699413-chr2:187700171..187702013,2	K562	blood:

Extended variants
information (count: 55 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:54)

rs_ID	r²[population]
rs10164815	0.97[EUR][1000 genomes]
rs10172225	0.95[EUR][1000 genomes]
rs10175178	0.95[EUR][1000 genomes]
rs10178860	0.95[EUR][1000 genomes]
rs10179175	0.95[EUR][1000 genomes]
rs10181270	0.97[EUR][1000 genomes]
rs10188450	0.97[EUR][1000 genomes]
rs10188850	0.89[EUR][1000 genomes]
rs10188869	0.97[EUR][1000 genomes]
rs10189037	0.97[EUR][1000 genomes]
rs10191094	0.95[EUR][1000 genomes]
rs10191209	0.95[EUR][1000 genomes]
rs10195632	0.95[EUR][1000 genomes]
rs10195758	0.95[EUR][1000 genomes]
rs10204903	0.97[EUR][1000 genomes]
rs11894819	0.92[EUR][1000 genomes]
rs11898022	0.92[EUR][1000 genomes]
rs11898112	0.95[EUR][1000 genomes]
rs11898665	0.97[EUR][1000 genomes]
rs11898741	0.97[EUR][1000 genomes]
rs13399866	0.97[EUR][1000 genomes]
rs13400804	0.97[EUR][1000 genomes]
rs13401173	0.95[EUR][1000 genomes]
rs13401579	0.95[EUR][1000 genomes]
rs13404398	0.94[EUR][1000 genomes]
rs13407627	0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs13414169	0.97[EUR][1000 genomes]
rs13414172	0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs13426438	0.95[EUR][1000 genomes]
rs17852915	0.95[EUR][1000 genomes]
rs17852916	0.95[EUR][1000 genomes]
rs17856918	0.95[EUR][1000 genomes]
rs35121986	0.95[EUR][1000 genomes]
rs4429438	0.92[EUR][1000 genomes]
rs4545967	0.92[EUR][1000 genomes]
rs62171870	0.92[EUR][1000 genomes]
rs6434197	0.97[EUR][1000 genomes]
rs6708289	0.97[EUR][1000 genomes]
rs6711860	0.97[EUR][1000 genomes]
rs6722473	0.95[EUR][1000 genomes]
rs6722495	0.92[EUR][1000 genomes]
rs6733279	0.95[EUR][1000 genomes]
rs6736846	0.92[EUR][1000 genomes]
rs6744956	0.95[EUR][1000 genomes]
rs6745065	0.95[EUR][1000 genomes]
rs6745572	0.95[EUR][1000 genomes]
rs6745642	0.95[EUR][1000 genomes]
rs6750961	0.95[EUR][1000 genomes]
rs6751106	0.89[EUR][1000 genomes]
rs6751828	0.95[EUR][1000 genomes]
rs6752200	0.95[EUR][1000 genomes]
rs6760362	0.95[EUR][1000 genomes]
rs7595459	0.92[EUR][1000 genomes]
rs7598838	0.92[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv428069	chr2:187575692-187766209	ZNF genes & repeats Weak transcription Active TSS Strong transcription Enhancers Genic enhancers Flanking Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region miRNA target site	4 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:2 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr2:187686400-187699000	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
2	chr2:187696000-187700400	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow

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