Variant report

rSNPs within LD-proxies of this variant (count:26)

rs_ID	r²[population]
rs10183619	0.83[ASN][1000 genomes]
rs10183642	0.83[ASN][1000 genomes]
rs10186912	0.83[ASN][1000 genomes]
rs10196630	0.83[ASN][1000 genomes]
rs10196749	0.83[ASN][1000 genomes]
rs10196758	0.83[ASN][1000 genomes]
rs10196801	0.83[ASN][1000 genomes]
rs10196895	0.83[ASN][1000 genomes]
rs10196939	0.83[ASN][1000 genomes]
rs13427438	0.83[ASN][1000 genomes]
rs13427514	0.83[ASN][1000 genomes]
rs1470504	0.83[ASN][1000 genomes]
rs1470505	0.83[ASN][1000 genomes]
rs1470506	0.83[ASN][1000 genomes]
rs1470508	0.83[ASN][1000 genomes]
rs1584235	0.83[ASN][1000 genomes]
rs1584237	0.81[ASN][1000 genomes]
rs1838880	0.83[ASN][1000 genomes]
rs1838881	0.83[ASN][1000 genomes]
rs2121410	0.83[ASN][1000 genomes]
rs2121411	0.83[ASN][1000 genomes]
rs2860937	0.83[ASN][1000 genomes]
rs2901812	0.80[ASN][1000 genomes]
rs55985303	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs62170343	0.81[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs72823122	0.83[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv834266	chr2:77120236-77287504	Enhancers Active TSS Weak transcription ZNF genes & repeats Flanking Active TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
2	nsv949670	chr2:77125218-77712607	Weak transcription Enhancers Bivalent Enhancer Strong transcription Active TSS Flanking Active TSS Transcr. at gene 5' and 3' ZNF genes & repeats Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
3	nsv519950	chr2:77213103-77256291	Enhancers Flanking Active TSS Weak transcription Bivalent Enhancer ZNF genes & repeats Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
4	nsv961764	chr2:77216571-77228053	Enhancers Weak transcription	lncRNA	n/a	inside rSNPs	diseases

No data

Chromatin state (count:4 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr2:77224200-77226600	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin
2	chr2:77224400-77225000	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
3	chr2:77224400-77226800	Enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin
4	chr2:77224600-77225000	Enhancers	iPS-18 Cell Line	embryonic stem cell

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