Variant report

Variant	rs62172138
Chromosome Location	chr2:77038345-77038346
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 19 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:12)

rs_ID	r²[population]
rs1517775	0.85[AMR][1000 genomes]
rs17333213	0.82[AMR][1000 genomes]
rs17405004	1.00[AFR][1000 genomes];0.97[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs1929443	0.82[AMR][1000 genomes]
rs1929444	0.82[AMR][1000 genomes]
rs4852417	1.00[AFR][1000 genomes]
rs62172107	1.00[AFR][1000 genomes];0.81[EUR][1000 genomes]
rs62172109	0.82[EUR][1000 genomes]
rs62172132	1.00[AFR][1000 genomes]
rs62173103	0.80[AMR][1000 genomes]
rs62173104	0.80[AMR][1000 genomes]
rs72819216	1.00[AFR][1000 genomes];0.95[AMR][1000 genomes];0.83[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:7 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1011401	chr2:76982546-77068714	Active TSS Enhancers Weak transcription Flanking Active TSS Strong transcription ZNF genes & repeats	TF binding region CpG island Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
2	nsv1005091	chr2:77009508-77112403	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Active TSS	Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
3	nsv520715	chr2:77021928-77080291	Weak transcription Enhancers Active TSS ZNF genes & repeats Flanking Active TSS	Chromatin interactive region	n/a	inside rSNPs	diseases
4	nsv1006086	chr2:77031163-77128651	Weak transcription Enhancers ZNF genes & repeats Active TSS	Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
5	nsv874321	chr2:77031247-77113949	Enhancers Active TSS Weak transcription ZNF genes & repeats	Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
6	nsv874322	chr2:77031247-77209750	Enhancers Weak transcription Active TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region	3 gene(s)	inside rSNPs	diseases
7	nsv1007648	chr2:77034405-77128651	Enhancers Weak transcription Active TSS ZNF genes & repeats	Chromatin interactive region	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:7 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr2:77009000-77039000	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
2	chr2:77036200-77041800	Weak transcription	iPS-18 Cell Line	embryonic stem cell
3	chr2:77036600-77038600	Weak transcription	Fetal Kidney	kidney
4	chr2:77036800-77038400	Weak transcription	HUES64 Cell Line	embryonic stem cell
5	chr2:77038200-77039000	Enhancers	ES-I3 Cell Line	embryonic stem cell
6	chr2:77038200-77039600	Enhancers	HUES6 Cell Line	embryonic stem cell
7	chr2:77038200-77040200	Enhancers	Fetal Lung	lung

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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