Variant report

Variant	rs62173044
Chromosome Location	chr2:187586347-187586348
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 15 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:14)

rs_ID	r²[population]
rs12475476	0.82[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs1448427	0.89[EUR][1000 genomes]
rs2276562	0.91[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs34840521	0.89[EUR][1000 genomes]
rs35348196	0.89[EUR][1000 genomes]
rs35540241	0.91[EUR][1000 genomes]
rs3768785	0.91[EUR][1000 genomes]
rs4667107	0.88[EUR][1000 genomes]
rs55781198	0.92[EUR][1000 genomes]
rs56222785	0.87[EUR][1000 genomes]
rs62196185	0.92[AFR][1000 genomes];0.91[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs718259	0.91[EUR][1000 genomes]
rs7585442	0.84[EUR][1000 genomes]
rs7585471	0.84[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv428069	chr2:187575692-187766209	ZNF genes & repeats Weak transcription Active TSS Strong transcription Enhancers Genic enhancers Flanking Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region miRNA target site	4 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:16 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr2:187583800-187588600	Weak transcription	Brain Substantia Nigra	brain
2	chr2:187583800-187588800	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
3	chr2:187584400-187587800	Weak transcription	Brain Germinal Matrix	brain
4	chr2:187584400-187589000	Weak transcription	Brain Angular Gyrus	brain
5	chr2:187584400-187590400	Weak transcription	Brain Hippocampus Middle	brain
6	chr2:187584600-187587400	Weak transcription	Brain Inferior Temporal Lobe	brain
7	chr2:187584600-187587800	Weak transcription	Rectal Smooth Muscle	rectum
8	chr2:187584600-187588400	Weak transcription	Fetal Brain Male	brain
9	chr2:187584600-187590200	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
10	chr2:187584600-187590600	Weak transcription	Fetal Brain Female	brain
11	chr2:187584600-187591600	Weak transcription	HUES48 Cell Line	embryonic stem cell
12	chr2:187584600-187591800	Weak transcription	H1 Cell Line	embryonic stem cell
13	chr2:187584600-187596000	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
14	chr2:187585600-187587200	Weak transcription	Cortex derived primary cultured neurospheres	brain
15	chr2:187585600-187587600	Enhancers	Brain Anterior Caudate	brain
16	chr2:187585800-187587600	Enhancers	Brain Cingulate Gyrus	brain

Quick Search:

Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

what's new

Quick links