Variant report

Variant	rs62177255
Chromosome Location	chr2:179119332-179119333
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 15 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:11)

rs_ID	r²[population]
rs10167889	0.82[EUR][1000 genomes]
rs12467696	0.82[EUR][1000 genomes]
rs1992753	0.82[EUR][1000 genomes]
rs4894006	0.83[EUR][1000 genomes]
rs62177256	0.84[EUR][1000 genomes]
rs62177257	0.82[EUR][1000 genomes]
rs62179162	0.82[EUR][1000 genomes]
rs62179163	0.83[EUR][1000 genomes]
rs62179164	0.83[EUR][1000 genomes]
rs62179167	0.81[EUR][1000 genomes]
rs9808049	0.82[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1009312	chr2:178924318-179215566	Weak transcription Active TSS Enhancers Strong transcription Flanking Bivalent TSS/Enh Flanking Active TSS Bivalent/Poised TSS Bivalent Enhancer ZNF genes & repeats Transcr. at gene 5' and 3' Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	11 gene(s)	inside rSNPs	diseases
2	nsv536057	chr2:178924318-179215566	Strong transcription Weak transcription Active TSS Bivalent/Poised TSS Enhancers Flanking Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer ZNF genes & repeats Transcr. at gene 5' and 3' Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	11 gene(s)	inside rSNPs	diseases
3	nsv875452	chr2:178963445-179167766	Bivalent Enhancer Enhancers Weak transcription Flanking Active TSS Active TSS Strong transcription Bivalent/Poised TSS Flanking Bivalent TSS/Enh Genic enhancers Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	10 gene(s)	inside rSNPs	diseases
4	nsv1011423	chr2:179084407-179166160	Enhancers Weak transcription Genic enhancers Flanking Active TSS ZNF genes & repeats Active TSS Bivalent Enhancer Strong transcription Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:16 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr2:179105400-179120800	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
2	chr2:179107800-179123000	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
3	chr2:179111200-179137400	Weak transcription	Right Atrium	heart
4	chr2:179112400-179120400	Weak transcription	Brain Angular Gyrus	brain
5	chr2:179116000-179120200	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
6	chr2:179116400-179120600	Weak transcription	Psoas Muscle	Psoas
7	chr2:179116600-179119400	Weak transcription	Brain Anterior Caudate	brain
8	chr2:179116600-179120600	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
9	chr2:179116800-179119400	Weak transcription	Skeletal Muscle Female	skeletal muscle
10	chr2:179116800-179120200	Weak transcription	Fetal Brain Male	brain
11	chr2:179116800-179120200	Weak transcription	Fetal Muscle Leg	muscle
12	chr2:179116800-179120600	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
13	chr2:179116800-179120800	Weak transcription	Skeletal Muscle Male	skeletal muscle
14	chr2:179116800-179120800	Weak transcription	K562	blood
15	chr2:179117000-179120600	Weak transcription	Cortex derived primary cultured neurospheres	brain
16	chr2:179117200-179120600	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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