Variant report

Variant	rs62179169
Chromosome Location	chr2:180381695-180381696
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 16 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:14)

rs_ID	r²[population]
rs13010423	0.96[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs17747835	0.96[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs17747870	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs17748453	0.87[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs17815250	0.96[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs62177234	0.84[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs62177238	0.92[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs62177239	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs62177241	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs62177242	0.85[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs72952294	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs72952297	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs72954339	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs9288038	0.82[AMR][1000 genomes];1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv875468	chr2:180352334-180396869	Enhancers Weak transcription Strong transcription Genic enhancers ZNF genes & repeats Flanking Active TSS	Chromatin interactive region	n/a	inside rSNPs	diseases
2	nsv875469	chr2:180354642-180396869	Enhancers Strong transcription Weak transcription Genic enhancers ZNF genes & repeats Flanking Active TSS	Chromatin interactive region	n/a	inside rSNPs	diseases

No data

Chromatin state (count:7 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr2:180370800-180392800	Weak transcription	Psoas Muscle	Psoas
2	chr2:180379000-180390400	Weak transcription	Skeletal Muscle Male	skeletal muscle
3	chr2:180379200-180383000	Weak transcription	Fetal Intestine Small	intestine
4	chr2:180379600-180383600	Strong transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
5	chr2:180381400-180386400	Weak transcription	Liver	Liver
6	chr2:180381600-180382200	Enhancers	HUES64 Cell Line	embryonic stem cell
7	chr2:180381600-180382600	Enhancers	iPS-20b Cell Line	embryonic stem cell

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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