Variant report

Variant	rs62179173
Chromosome Location	chr2:180407814-180407815
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 7 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:5)

rs_ID	r²[population]
rs1546603	0.88[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs59255331	0.89[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs62176083	0.85[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs62179172	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs62179176	0.89[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv875470	chr2:180400021-180432529	Weak transcription Enhancers Bivalent Enhancer Active TSS Flanking Active TSS Strong transcription Flanking Bivalent TSS/Enh ZNF genes & repeats Genic enhancers Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
2	nsv523865	chr2:180403128-180426764	Weak transcription Enhancers ZNF genes & repeats Flanking Active TSS Active TSS Strong transcription Bivalent Enhancer Flanking Bivalent TSS/Enh Genic enhancers	TF binding region CpG island Chromatin interactive region	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:17 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr2:180403200-180408000	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
2	chr2:180403800-180408000	Weak transcription	Osteobl	bone
3	chr2:180403800-180408600	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
4	chr2:180403800-180408600	Weak transcription	Fetal Kidney	kidney
5	chr2:180403800-180409800	Weak transcription	Skeletal Muscle Male	skeletal muscle
6	chr2:180404000-180408000	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
7	chr2:180404000-180410000	Strong transcription	Liver	Liver
8	chr2:180404200-180409800	Weak transcription	Gastric	stomach
9	chr2:180405400-180410600	Enhancers	HepG2	liver
10	chr2:180405800-180408000	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
11	chr2:180407000-180411400	Weak transcription	Right Atrium	heart
12	chr2:180407400-180408800	Enhancers	Muscle Satellite Cultured Cells	--
13	chr2:180407600-180408400	Genic enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
14	chr2:180407800-180408400	Enhancers	H1 Derived Mesenchymal Stem Cells	ES cell derived
15	chr2:180407800-180408400	Enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
16	chr2:180407800-180408800	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin
17	chr2:180407800-180410000	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived

Quick Search:

Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

what's new

Quick links