Variant report

Variant	rs62181734
Chromosome Location	chr2:172508879-172508880
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr2:172508719..172510692-chr2:172541711..172543434,2	MCF-7	breast:
2	chr2:172502107..172505045-chr2:172508679..172510845,2	K562	blood:

Extended variants
information (count: 27 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:26)

rs_ID	r²[population]
rs10432471	0.80[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs11680728	0.85[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs11693157	0.85[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs12618717	0.85[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs12991896	0.85[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs12997634	0.85[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs13016328	0.85[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs13025856	0.85[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs1399960	0.85[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs2102740	0.85[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs2138350	0.85[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs2356797	0.80[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs34919335	0.86[AMR][1000 genomes];0.95[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs4265980	0.85[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs4668396	0.85[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs57130402	0.80[AFR][1000 genomes];0.89[AMR][1000 genomes];0.95[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs6433305	0.85[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs6704691	0.82[EUR][1000 genomes]
rs6743208	0.82[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs6747069	0.82[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs7592639	0.82[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs7606149	0.84[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs7606189	0.86[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs7606481	0.82[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs908371	0.85[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs997635	0.85[AMR][1000 genomes];0.92[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv997638	chr2:172442205-172560406	Weak transcription Flanking Active TSS Genic enhancers Active TSS Enhancers Strong transcription ZNF genes & repeats Bivalent Enhancer Bivalent/Poised TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region	13 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:10 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr2:172507800-172509600	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin
2	chr2:172508200-172509600	Enhancers	HMEC	breast
3	chr2:172508200-172509600	Enhancers	NHEK	skin
4	chr2:172508800-172509000	Flanking Active TSS	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
5	chr2:172508800-172509000	Bivalent Enhancer	Muscle Satellite Cultured Cells	--
6	chr2:172508800-172509400	Enhancers	NH-A	brain
7	chr2:172508800-172509600	Enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin
8	chr2:172508800-172509600	Enhancers	NHDF-Ad	bronchial
9	chr2:172508800-172509600	Enhancers	Osteobl	bone
10	chr2:172508800-172509800	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links