Variant report

Variant	rs62184353
Chromosome Location	chr2:235108750-235108751
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 23 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:19)

rs_ID	r²[population]
rs17582501	0.81[AMR][1000 genomes]
rs2286817	0.84[AMR][1000 genomes];0.84[ASN][1000 genomes]
rs4663355	0.81[AMR][1000 genomes]
rs4663356	0.81[AMR][1000 genomes]
rs4663358	0.86[AFR][1000 genomes];0.81[AMR][1000 genomes]
rs4663359	0.86[AFR][1000 genomes];0.81[AMR][1000 genomes]
rs4663360	0.86[AFR][1000 genomes];0.81[AMR][1000 genomes]
rs4663361	0.86[AFR][1000 genomes];0.81[AMR][1000 genomes]
rs62184336	0.86[AFR][1000 genomes];0.81[AMR][1000 genomes]
rs62184339	0.81[AMR][1000 genomes]
rs62184340	0.81[AMR][1000 genomes]
rs62184341	0.81[AMR][1000 genomes]
rs62184342	0.81[AMR][1000 genomes]
rs62184343	0.81[AMR][1000 genomes]
rs62184344	0.81[AMR][1000 genomes]
rs62184345	0.81[AMR][1000 genomes]
rs62184348	0.81[AMR][1000 genomes]
rs62184349	0.93[AFR][1000 genomes]
rs62184354	0.87[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1013712	chr2:234558457-235495825	Enhancers Weak transcription Active TSS Flanking Active TSS ZNF genes & repeats Strong transcription Genic enhancers Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	41 gene(s)	inside rSNPs	diseases
2	nsv532476	chr2:234595695-235134381	Enhancers Active TSS Weak transcription Flanking Active TSS Bivalent Enhancer Strong transcription ZNF genes & repeats Genic enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	37 gene(s)	inside rSNPs	diseases
3	nsv834571	chr2:234929288-235110332	Enhancers Bivalent Enhancer Weak transcription Flanking Active TSS Active TSS ZNF genes & repeats Bivalent/Poised TSS Strong transcription Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
4	nsv584713	chr2:235092011-235236611	Enhancers Active TSS Weak transcription Flanking Active TSS ZNF genes & repeats Bivalent Enhancer Genic enhancers Transcr. at gene 5' and 3' Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:4 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr2:235104600-235111000	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
2	chr2:235108000-235109200	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
3	chr2:235108000-235111400	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
4	chr2:235108400-235111600	Enhancers	A549	lung

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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