Variant report

Variant	rs62188005
Chromosome Location	chr2:213576550-213576551
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 4 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:2)

rs_ID	r²[population]
rs11678941	1.00[AFR][1000 genomes]
rs62186462	1.00[AFR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv460093	chr2:213563072-213610359	Enhancers Weak transcription ZNF genes & repeats Flanking Active TSS Active TSS	Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
2	nsv584426	chr2:213563072-213610359	Enhancers Weak transcription ZNF genes & repeats Flanking Active TSS Active TSS	Chromatin interactive region	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:14 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr2:213571600-213577000	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
2	chr2:213572800-213578200	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
3	chr2:213574200-213577000	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
4	chr2:213574800-213576800	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
5	chr2:213575400-213577600	Enhancers	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
6	chr2:213576000-213578200	Enhancers	Cortex derived primary cultured neurospheres	brain
7	chr2:213576000-213579000	Enhancers	HMEC	breast
8	chr2:213576000-213579200	Enhancers	NHEK	skin
9	chr2:213576200-213577000	Weak transcription	NHLF	lung
10	chr2:213576200-213577200	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
11	chr2:213576200-213577200	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
12	chr2:213576200-213577600	Enhancers	Muscle Satellite Cultured Cells	--
13	chr2:213576400-213576800	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
14	chr2:213576400-213577400	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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