Variant report

Variant	rs62188289
Chromosome Location	chr2:183316268-183316269
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 89 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:80)

rs_ID	r²[population]
rs10178586	0.87[ASN][1000 genomes]
rs10207132	0.87[EUR][1000 genomes]
rs10497600	0.86[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs10497601	0.87[AFR][1000 genomes];0.87[ASN][1000 genomes]
rs10497602	0.81[AFR][1000 genomes];0.82[ASN][1000 genomes]
rs1125184	0.83[AFR][1000 genomes];0.93[ASN][1000 genomes]
rs12465662	0.87[ASN][1000 genomes]
rs12465755	0.87[ASN][1000 genomes]
rs12466618	0.81[ASN][1000 genomes]
rs12466937	0.87[ASN][1000 genomes]
rs12468232	0.81[ASN][1000 genomes]
rs12468346	0.81[ASN][1000 genomes]
rs12470124	0.84[ASN][1000 genomes]
rs12473820	0.91[AFR][1000 genomes];0.88[ASN][1000 genomes]
rs12474820	0.81[ASN][1000 genomes]
rs12475048	0.81[ASN][1000 genomes]
rs12478132	0.81[ASN][1000 genomes]
rs12479259	0.81[ASN][1000 genomes]
rs13407156	0.80[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs1346775	0.81[ASN][1000 genomes]
rs1367203	0.95[AFR][1000 genomes];0.86[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs1367204	0.87[ASN][1000 genomes]
rs1430147	0.81[EUR][1000 genomes]
rs1430148	0.81[EUR][1000 genomes]
rs1430160	0.85[ASN][1000 genomes]
rs1583114	0.81[AFR][1000 genomes];0.83[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs16823233	0.80[AFR][1000 genomes];0.87[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs16823254	1.00[AFR][1000 genomes];0.93[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs16823257	0.87[AFR][1000 genomes];0.86[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs16823275	0.82[ASN][1000 genomes]
rs17265027	0.80[AFR][1000 genomes];0.87[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs17265061	0.90[AFR][1000 genomes];0.89[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs17265166	0.81[ASN][1000 genomes]
rs17265189	0.81[ASN][1000 genomes]
rs17356166	0.90[AFR][1000 genomes];0.89[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs17356207	0.95[AFR][1000 genomes];0.86[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs17356214	0.95[AFR][1000 genomes];0.86[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs17356296	0.81[ASN][1000 genomes]
rs17356303	0.81[ASN][1000 genomes]
rs28569979	0.88[EUR][1000 genomes]
rs34103461	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs34744930	0.87[ASN][1000 genomes]
rs35809203	0.83[AFR][1000 genomes];0.87[ASN][1000 genomes]
rs4318355	0.90[AFR][1000 genomes]
rs4496292	0.82[ASN][1000 genomes]
rs4572561	0.94[ASN][1000 genomes]
rs4666582	0.87[ASN][1000 genomes]
rs4666585	0.87[ASN][1000 genomes]
rs4666835	0.87[ASN][1000 genomes]
rs4666837	0.81[ASN][1000 genomes]
rs62187662	0.81[ASN][1000 genomes]
rs62188260	0.81[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs62188266	0.81[AFR][1000 genomes];0.83[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs62188267	0.90[AFR][1000 genomes];0.83[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs62188268	1.00[AFR][1000 genomes];0.93[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs62188269	1.00[AFR][1000 genomes];0.93[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs62188270	0.95[AFR][1000 genomes];0.86[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs62188283	0.95[AFR][1000 genomes];0.86[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs62188284	0.95[AFR][1000 genomes];0.86[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs62188286	0.95[AFR][1000 genomes];0.86[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs62188287	0.95[AFR][1000 genomes];0.86[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs62188288	1.00[AFR][1000 genomes];0.93[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs62188290	0.95[AFR][1000 genomes];0.91[AMR][1000 genomes];0.94[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs62188294	0.90[ASN][1000 genomes]
rs62188295	0.83[AFR][1000 genomes];0.93[ASN][1000 genomes]
rs62188296	0.93[ASN][1000 genomes]
rs62188297	0.93[ASN][1000 genomes]
rs62189024	0.93[ASN][1000 genomes]
rs62189025	0.85[ASN][1000 genomes]
rs62189027	0.87[ASN][1000 genomes]
rs62190201	0.87[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs62190676	0.81[ASN][1000 genomes]
rs62190677	0.81[AFR][1000 genomes];0.82[ASN][1000 genomes]
rs62190678	0.81[ASN][1000 genomes]
rs62190679	0.81[ASN][1000 genomes]
rs62190680	0.81[ASN][1000 genomes]
rs62190681	0.81[ASN][1000 genomes]
rs62190682	0.81[ASN][1000 genomes]
rs62190684	0.82[ASN][1000 genomes]
rs6760364	0.87[AFR][1000 genomes];0.87[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:9 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv533782	chr2:183059730-183500040	Enhancers Active TSS Weak transcription Flanking Active TSS ZNF genes & repeats Strong transcription Bivalent/Poised TSS Genic enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
2	nsv834481	chr2:183189758-183339577	Enhancers Weak transcription ZNF genes & repeats Active TSS Flanking Active TSS Strong transcription Genic enhancers Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
3	nsv1009882	chr2:183213152-184171519	Weak transcription Strong transcription Flanking Active TSS Enhancers Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Genic enhancers Bivalent/Poised TSS Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	35 gene(s)	inside rSNPs	diseases
4	esv2830429	chr2:183300759-183545378	Enhancers Weak transcription ZNF genes & repeats Flanking Active TSS Active TSS Bivalent Enhancer Genic enhancers Strong transcription Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
5	esv3323574	chr2:183315057-183317155	Weak transcription Enhancers	n/a	n/a	inside rSNPs	diseases
6	esv2479479	chr2:183315368-183316896	Weak transcription Enhancers	n/a	n/a	inside rSNPs	diseases
7	esv3322767	chr2:183315607-183316605	Weak transcription	n/a	n/a	inside rSNPs	diseases
8	esv2241730	chr2:183315617-183316309	Weak transcription	n/a	n/a	inside rSNPs	diseases
9	esv7845	chr2:183315731-183316385	Weak transcription	n/a	n/a	inside rSNPs	diseases

No data

Chromatin state (count:4 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr2:183298800-183320800	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
2	chr2:183313000-183321400	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
3	chr2:183313000-183342600	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
4	chr2:183313800-183320800	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow

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