Variant report

Variant	rs62193314
Chromosome Location	chr20:11147563-11147564
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 27 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:24)

rs_ID	r²[population]
rs16992273	0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17225014	0.95[AFR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2207410	0.91[AFR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2207411	0.95[AFR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4271823	0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4527274	0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6040390	0.82[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6040391	0.82[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6040396	0.96[EUR][1000 genomes]
rs6040403	0.95[AFR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6040416	0.95[AFR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs62191760	0.95[AFR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs62191763	0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs62191764	0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs62193315	0.95[AFR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs62193316	0.95[AFR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs62193319	0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs62193320	0.87[AFR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs66677123	0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73080531	0.81[AFR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73080548	0.95[AFR][1000 genomes];0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73080549	0.95[AFR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs8119166	0.95[AFR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs8119301	0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1065969	chr20:10850562-11464172	Enhancers Flanking Active TSS Weak transcription Active TSS ZNF genes & repeats Strong transcription Bivalent Enhancer Flanking Bivalent TSS/Enh Genic enhancers	TF binding region Chromatin interactive region lncRNA	11 gene(s)	inside rSNPs	diseases
2	nsv544181	chr20:10850562-11464172	Weak transcription Enhancers Active TSS Flanking Active TSS ZNF genes & repeats Bivalent Enhancer Flanking Bivalent TSS/Enh Strong transcription Genic enhancers	TF binding region Chromatin interactive region lncRNA	11 gene(s)	inside rSNPs	diseases
3	nsv585415	chr20:11134907-11383327	Enhancers Weak transcription Active TSS Flanking Active TSS Bivalent Enhancer Strong transcription ZNF genes & repeats Genic enhancers Flanking Bivalent TSS/Enh	TF binding region Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:9 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr20:11140200-11148800	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
2	chr20:11140800-11148600	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
3	chr20:11141200-11148400	Weak transcription	HSMMtube	muscle
4	chr20:11141400-11151000	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
5	chr20:11144200-11148600	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
6	chr20:11146200-11147800	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Male	--
7	chr20:11146600-11150800	Weak transcription	Fetal Kidney	kidney
8	chr20:11146600-11151200	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
9	chr20:11147400-11149600	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--

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