Variant report

Variant	rs62194756
Chromosome Location	chr20:23852463-23852464
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 10 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:7)

rs_ID	r²[population]
rs6114338	0.81[AMR][1000 genomes]
rs6114339	0.81[AMR][1000 genomes]
rs6114340	0.81[AMR][1000 genomes]
rs6114347	0.88[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs62194737	0.81[AMR][1000 genomes]
rs62194757	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs62194758	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv491876	chr20:23436633-24031374	Weak transcription Flanking Active TSS Enhancers Active TSS Strong transcription Bivalent Enhancer Genic enhancers Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	42 gene(s)	inside rSNPs	diseases
2	nsv833944	chr20:23806288-24021865	Bivalent Enhancer Genic enhancers Enhancers Weak transcription Flanking Active TSS Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	diseases
3	nsv585730	chr20:23809681-23862844	Weak transcription Enhancers Flanking Active TSS Bivalent Enhancer Active TSS Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:12 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr20:23848200-23853400	Weak transcription	Thymus	Thymus
2	chr20:23848800-23860400	Enhancers	Fetal Thymus	thymus
3	chr20:23850800-23853000	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
4	chr20:23851200-23853200	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
5	chr20:23851400-23859400	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
6	chr20:23851600-23852800	Weak transcription	Dnd41	blood
7	chr20:23851800-23855400	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
8	chr20:23852200-23854400	Weak transcription	H9 Cell Line	embryonic stem cell
9	chr20:23852400-23853000	Weak transcription	H1 Cell Line	embryonic stem cell
10	chr20:23852400-23854200	Weak transcription	HUES6 Cell Line	embryonic stem cell
11	chr20:23852400-23854400	Weak transcription	Duodenum Smooth Muscle	Duodenum
12	chr20:23852400-23864800	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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