Variant report

Variant	rs62198832
Chromosome Location	chr7:3060821-3060822
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr7:3057091..3059253-chr7:3060041..3061625,2	K562	blood:

Extended variants
information (count: 14 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:5)

rs_ID	r²[population]
rs10497664	0.83[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs12475533	0.80[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs13036091	0.81[AFR][1000 genomes];0.82[EUR][1000 genomes]
rs2113532	0.88[ASN][1000 genomes]
rs6740604	0.92[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:9 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1022938	chr7:2899514-3131881	Enhancers Weak transcription Active TSS Strong transcription ZNF genes & repeats Bivalent Enhancer Flanking Active TSS Bivalent/Poised TSS Flanking Bivalent TSS/Enh Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	23 gene(s)	inside rSNPs	diseases
2	nsv605873	chr7:2920067-3204177	Bivalent Enhancer Enhancers Genic enhancers Weak transcription Transcr. at gene 5' and 3' Active TSS Flanking Active TSS Strong transcription ZNF genes & repeats Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	13 gene(s)	inside rSNPs	diseases
3	nsv1025727	chr7:2938301-3064008	Enhancers Weak transcription Strong transcription Genic enhancers ZNF genes & repeats Bivalent Enhancer Flanking Active TSS Active TSS Bivalent/Poised TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	4 gene(s)	inside rSNPs	diseases
4	nsv1026476	chr7:2965034-3311344	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Active TSS Bivalent Enhancer Strong transcription Bivalent/Poised TSS Genic enhancers Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	16 gene(s)	inside rSNPs	diseases
5	nsv538656	chr7:2965034-3311344	Flanking Active TSS Enhancers Weak transcription Strong transcription Genic enhancers Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	16 gene(s)	inside rSNPs	diseases
6	nsv464260	chr7:2966138-3315572	Enhancers Flanking Active TSS Weak transcription Strong transcription ZNF genes & repeats Genic enhancers Active TSS Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	16 gene(s)	inside rSNPs	diseases
7	nsv605874	chr7:2966138-3315572	Enhancers Strong transcription Weak transcription Flanking Active TSS Bivalent/Poised TSS ZNF genes & repeats Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	16 gene(s)	inside rSNPs	diseases
8	nsv1018287	chr7:2967524-3298539	Genic enhancers Enhancers Strong transcription Weak transcription Active TSS ZNF genes & repeats Flanking Active TSS Bivalent Enhancer Bivalent/Poised TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	16 gene(s)	inside rSNPs	diseases
9	nsv538657	chr7:2967524-3298539	Bivalent/Poised TSS Enhancers Strong transcription Weak transcription Bivalent Enhancer Genic enhancers Active TSS ZNF genes & repeats Flanking Active TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	16 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:25 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:3054600-3066600	Weak transcription	Spleen	Spleen
2	chr7:3056800-3067800	Weak transcription	iPS-15b Cell Line	embryonic stem cell
3	chr7:3057600-3068400	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
4	chr7:3058200-3067000	Weak transcription	Rectal Mucosa Donor 29	rectum
5	chr7:3059000-3062200	ZNF genes & repeats	GM12878-XiMat	blood
6	chr7:3059400-3062200	ZNF genes & repeats	Primary B cells from peripheral blood	blood
7	chr7:3059400-3062400	ZNF genes & repeats	Primary B cells from cord blood	blood
8	chr7:3059600-3061400	ZNF genes & repeats	Primary T helper cells fromperipheralblood	blood
9	chr7:3059600-3061600	ZNF genes & repeats	Primary T cells fromperipheralblood	blood
10	chr7:3059600-3062000	ZNF genes & repeats	Primary T cells effector/memory enriched fromperipheralblood	blood
11	chr7:3059800-3061800	ZNF genes & repeats	Primary T helper cells PMA-I stimulated	--
12	chr7:3059800-3062200	ZNF genes & repeats	Primary T cells from cord blood	blood
13	chr7:3059800-3062200	ZNF genes & repeats	Primary T regulatory cells fromperipheralblood	blood
14	chr7:3059800-3067800	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood
15	chr7:3060000-3061600	Strong transcription	Primary T helper 17 cells PMA-I stimulated	--
16	chr7:3060000-3063800	Strong transcription	Primary Natural Killer cells fromperipheralblood	blood
17	chr7:3060000-3065800	Weak transcription	Thymus	Thymus
18	chr7:3060200-3061600	Strong transcription	Primary T helper memory cells from peripheral blood 1	blood
19	chr7:3060400-3061000	Strong transcription	Primary T helper naive cells fromperipheralblood	blood
20	chr7:3060400-3063800	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
21	chr7:3060400-3066600	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
22	chr7:3060400-3067200	Weak transcription	Primary T helper naive cells from peripheral blood	blood
23	chr7:3060400-3068200	Weak transcription	Fetal Thymus	thymus
24	chr7:3060600-3065400	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
25	chr7:3060600-3065400	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin

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