Variant report

Variant	rs62200894
Chromosome Location	chr6:44844243-44844244
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 72 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:70)

rs_ID	r²[population]
rs1016410	0.81[AFR][1000 genomes];0.84[ASN][1000 genomes]
rs10165206	0.89[EUR][1000 genomes]
rs10173630	0.86[EUR][1000 genomes]
rs10183921	0.84[EUR][1000 genomes]
rs10192246	0.88[EUR][1000 genomes]
rs12328805	0.92[EUR][1000 genomes]
rs12464270	0.86[AFR][1000 genomes];0.81[AMR][1000 genomes];0.83[ASN][1000 genomes]
rs12464403	0.82[AFR][1000 genomes];0.82[AMR][1000 genomes];0.96[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs12464436	0.84[ASN][1000 genomes]
rs12464794	0.86[EUR][1000 genomes]
rs12464986	0.88[AFR][1000 genomes];0.92[AMR][1000 genomes];0.92[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs12466093	0.84[ASN][1000 genomes]
rs12474127	0.92[EUR][1000 genomes]
rs12475622	0.92[AFR][1000 genomes];0.90[AMR][1000 genomes];0.98[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs12475648	0.86[EUR][1000 genomes]
rs12478116	0.81[AFR][1000 genomes];0.88[AMR][1000 genomes];0.98[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs12988992	0.90[AFR][1000 genomes];0.96[AMR][1000 genomes];0.99[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs12994796	0.88[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs13002387	0.81[ASN][1000 genomes]
rs13003744	0.81[AFR][1000 genomes];0.85[ASN][1000 genomes]
rs13004035	0.84[AMR][1000 genomes];0.90[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs13015006	0.86[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs13026009	0.86[EUR][1000 genomes]
rs13031291	0.91[EUR][1000 genomes]
rs13387605	0.86[EUR][1000 genomes]
rs13411247	0.86[EUR][1000 genomes]
rs13429564	0.86[EUR][1000 genomes]
rs13432112	0.89[EUR][1000 genomes]
rs1386520	0.80[EUR][1000 genomes]
rs1601725	0.81[EUR][1000 genomes]
rs2287608	0.81[AFR][1000 genomes];0.85[ASN][1000 genomes]
rs2370505	0.83[AFR][1000 genomes];0.89[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs35986831	0.92[AFR][1000 genomes];0.83[AMR][1000 genomes];0.93[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs36011205	0.83[AMR][1000 genomes];0.96[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs4233786	0.93[EUR][1000 genomes]
rs4263075	0.86[AFR][1000 genomes];0.90[AMR][1000 genomes];0.99[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs4311032	0.86[EUR][1000 genomes]
rs4343435	0.93[EUR][1000 genomes]
rs4343438	0.86[EUR][1000 genomes]
rs4377301	0.83[EUR][1000 genomes]
rs4430905	0.92[EUR][1000 genomes]
rs4456665	0.80[EUR][1000 genomes]
rs4476313	0.92[EUR][1000 genomes]
rs4500902	0.88[AFR][1000 genomes];0.92[AMR][1000 genomes];0.92[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs4500903	0.93[EUR][1000 genomes]
rs4510179	0.86[EUR][1000 genomes]
rs4536613	0.86[EUR][1000 genomes]
rs4561628	0.92[AFR][1000 genomes];0.88[AMR][1000 genomes];0.98[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs4571026	0.90[EUR][1000 genomes]
rs4577247	0.82[EUR][1000 genomes]
rs4611613	0.83[EUR][1000 genomes]
rs4619567	0.86[EUR][1000 genomes]
rs4627526	0.92[EUR][1000 genomes]
rs4666691	0.82[AFR][1000 genomes];0.81[AMR][1000 genomes];0.96[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs4666692	0.85[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs4667056	0.86[EUR][1000 genomes]
rs4667057	0.92[AFR][1000 genomes];0.91[AMR][1000 genomes];0.99[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs4667064	0.87[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs4667065	0.87[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs4667066	0.87[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs4667067	0.86[EUR][1000 genomes]
rs58696152	0.80[ASN][1000 genomes]
rs59190502	0.89[AFR][1000 genomes];0.87[ASN][1000 genomes]
rs62199142	0.81[ASN][1000 genomes]
rs62199145	0.81[AFR][1000 genomes];0.85[ASN][1000 genomes]
rs62200949	0.92[AFR][1000 genomes];0.83[AMR][1000 genomes];0.93[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs67196811	0.92[AFR][1000 genomes];0.87[AMR][1000 genomes];0.99[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs71407825	0.81[ASN][1000 genomes]
rs7564229	0.85[EUR][1000 genomes]
rs7602728	0.81[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv885861	chr6:44837356-45043618	Weak transcription Enhancers ZNF genes & repeats Active TSS Flanking Active TSS Genic enhancers Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
2	esv3384988	chr6:44840124-44845422	Weak transcription	n/a	n/a	inside rSNPs	n/a

No data

Chromatin state (count:4 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:44833600-44849400	Weak transcription	Primary T helper cells fromperipheralblood	blood
2	chr6:44838200-44848800	Weak transcription	Primary T helper cells PMA-I stimulated	--
3	chr6:44838400-44854200	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
4	chr6:44844200-44847800	Weak transcription	Dnd41	blood

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