Variant report
Variant | rs62204435 |
---|---|
Chromosome Location | chr20:14457379-14457380 |
allele | C/T |
Outlinks | Ensembl   UCSC |
- TF binding region (count:0)
- CpG islands (count:0)
- Chromatin interactive region (count:0)
- LncRNA region (count:0)
- Mature miRNA region (count: 0)
- miRNA target sites (count:0)
No data |
No data |
No data |
No data |
No data |
No data |
No data |
rs_ID | r2[population] |
---|---|
rs13036742 | 1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes] |
rs13036861 | 1.00[AFR][1000 genomes];0.97[AMR][1000 genomes];0.95[EUR][1000 genomes] |
rs13037096 | 0.83[AMR][1000 genomes] |
rs13039188 | 1.00[AMR][1000 genomes];0.96[EUR][1000 genomes] |
rs13039594 | 1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes] |
rs13039619 | 1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes] |
rs13040558 | 1.00[AFR][1000 genomes];0.92[AMR][1000 genomes];0.88[EUR][1000 genomes] |
rs13040987 | 0.97[AMR][1000 genomes];0.90[EUR][1000 genomes] |
rs13042179 | 1.00[AFR][1000 genomes];0.92[AMR][1000 genomes];0.85[EUR][1000 genomes] |
rs13043921 | 1.00[AFR][1000 genomes];0.97[AMR][1000 genomes];0.98[EUR][1000 genomes] |
rs13044705 | 1.00[AFR][1000 genomes];0.92[AMR][1000 genomes];0.97[EUR][1000 genomes] |
rs13044911 | 1.00[AFR][1000 genomes];0.92[AMR][1000 genomes];0.88[EUR][1000 genomes] |
rs13045655 | 1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes] |
rs17226957 | 0.83[AMR][1000 genomes] |
rs17226971 | 0.83[AMR][1000 genomes] |
rs17226999 | 1.00[AFR][1000 genomes];0.92[AMR][1000 genomes];0.88[EUR][1000 genomes] |
rs17812658 | 0.83[AMR][1000 genomes] |
rs2210655 | 0.83[AMR][1000 genomes] |
rs34085437 | 0.83[AMR][1000 genomes] |
rs34094793 | 0.83[AMR][1000 genomes] |
rs34287609 | 1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes] |
rs34522477 | 1.00[AFR][1000 genomes];0.92[AMR][1000 genomes];0.88[EUR][1000 genomes] |
rs34538736 | 1.00[AFR][1000 genomes];0.92[AMR][1000 genomes];0.88[EUR][1000 genomes] |
rs34671733 | 1.00[AFR][1000 genomes];0.92[AMR][1000 genomes];1.00[EUR][1000 genomes] |
rs34824714 | 1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes] |
rs34880844 | 0.90[AMR][1000 genomes];0.85[EUR][1000 genomes] |
rs34955232 | 1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes] |
rs35171263 | 1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes] |
rs35346025 | 0.83[AMR][1000 genomes] |
rs35445955 | 1.00[AFR][1000 genomes];0.92[AMR][1000 genomes];0.88[EUR][1000 genomes] |
rs35505382 | 0.80[AMR][1000 genomes] |
rs35511588 | 1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes] |
rs35554517 | 0.83[AMR][1000 genomes] |
rs35577212 | 1.00[AFR][1000 genomes];0.92[AMR][1000 genomes];0.88[EUR][1000 genomes] |
rs35610301 | 1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes] |
rs35631624 | 0.97[AMR][1000 genomes];0.90[EUR][1000 genomes] |
rs35649042 | 1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes] |
rs35733982 | 1.00[AFR][1000 genomes];0.92[AMR][1000 genomes];0.88[EUR][1000 genomes] |
rs35747430 | 1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes] |
rs35760794 | 1.00[AFR][1000 genomes];0.95[AMR][1000 genomes];0.98[EUR][1000 genomes] |
rs35763852 | 1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes] |
rs35943017 | 1.00[AFR][1000 genomes];0.97[AMR][1000 genomes];0.90[EUR][1000 genomes] |
rs36062805 | 0.83[AMR][1000 genomes] |
rs36134325 | 1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes] |
rs41328645 | 1.00[AFR][1000 genomes];0.92[AMR][1000 genomes];0.90[EUR][1000 genomes] |
rs4630827 | 1.00[AFR][1000 genomes];0.97[AMR][1000 genomes];0.90[EUR][1000 genomes] |
rs62204373 | 1.00[AFR][1000 genomes];0.92[AMR][1000 genomes];0.86[EUR][1000 genomes] |
rs62204396 | 1.00[AFR][1000 genomes];0.92[AMR][1000 genomes];0.88[EUR][1000 genomes] |
rs62204398 | 1.00[AFR][1000 genomes];0.92[AMR][1000 genomes];0.88[EUR][1000 genomes] |
rs62204402 | 1.00[AFR][1000 genomes];0.97[AMR][1000 genomes];0.90[EUR][1000 genomes] |
rs62204403 | 1.00[AFR][1000 genomes];0.97[AMR][1000 genomes];0.90[EUR][1000 genomes] |
rs62204406 | 1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.97[EUR][1000 genomes] |
rs62204411 | 1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes] |
rs62204429 | 1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes] |
rs62204437 | 1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes] |
rs62207627 | 0.83[AMR][1000 genomes] |
rs74179739 | 0.83[AMR][1000 genomes] |
rs74179740 | 1.00[AFR][1000 genomes];0.92[AMR][1000 genomes];0.88[EUR][1000 genomes] |
rs74179742 | 1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes] |
rs915074 | 1.00[AFR][1000 genomes];0.92[AMR][1000 genomes];0.88[EUR][1000 genomes] |
rs915075 | 1.00[AFR][1000 genomes];0.92[AMR][1000 genomes];0.88[EUR][1000 genomes] |
rs963329 | 0.83[AMR][1000 genomes] |
Variant overlapped rSNPs/rCNVs (count:14 , 50 per page) page:
1
No. | Variant name | Chromosome position | Chromatin state | Related regulatory elements | Target genes | Extended variants | Associated traits |
---|---|---|---|---|---|---|---|
1 | nsv1057486 | chr20:14077828-14469129 | ZNF genes & repeats Weak transcription Enhancers Active TSS Strong transcription Flanking Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Genic enhancers Transcr. at gene 5' and 3' Bivalent/Poised TSS | TF binding regionCpG islandChromatin interactive regionlncRNA | 5 gene(s) | inside rSNPs | diseases |
2 | nsv1055499 | chr20:14224873-14848061 | Strong transcription Enhancers Weak transcription Active TSS Flanking Active TSS Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent Enhancer Genic enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS | TF binding regionCpG islandChromatin interactive regionlncRNA | 7 gene(s) | inside rSNPs | diseases |
3 | nsv585440 | chr20:14352394-14457834 | Enhancers Weak transcription Flanking Active TSS Active TSS ZNF genes & repeats Bivalent Enhancer Strong transcription | Chromatin interactive region | n/a | inside rSNPs | diseases |
4 | nsv1063733 | chr20:14357857-14459453 | Enhancers ZNF genes & repeats Bivalent Enhancer Weak transcription Active TSS Flanking Active TSS Strong transcription | Chromatin interactive region | n/a | inside rSNPs | diseases |
5 | nsv1064721 | chr20:14384931-14648223 | Weak transcription Enhancers Active TSS Flanking Active TSS ZNF genes & repeats Strong transcription Bivalent Enhancer Genic enhancers | TF binding regionChromatin interactive regionlncRNA | 3 gene(s) | inside rSNPs | diseases |
6 | nsv833926 | chr20:14410153-14572336 | Enhancers Weak transcription Flanking Active TSS Active TSS Bivalent Enhancer ZNF genes & repeats Genic enhancers Strong transcription | TF binding regionChromatin interactive regionlncRNA | 3 gene(s) | inside rSNPs | diseases |
7 | nsv585442 | chr20:14420556-14485947 | Weak transcription Flanking Active TSS Enhancers Active TSS ZNF genes & repeats | TF binding regionChromatin interactive regionlncRNA | 1 gene(s) | inside rSNPs | diseases |
8 | nsv1065426 | chr20:14426642-14478256 | Enhancers Weak transcription ZNF genes & repeats Active TSS Flanking Active TSS | TF binding regionChromatin interactive regionlncRNA | 1 gene(s) | inside rSNPs | diseases |
9 | nsv1059770 | chr20:14432394-14549781 | Enhancers Weak transcription Active TSS ZNF genes & repeats Flanking Active TSS Bivalent Enhancer Genic enhancers | TF binding regionChromatin interactive regionlncRNA | 3 gene(s) | inside rSNPs | diseases |
10 | nsv544187 | chr20:14432394-14549781 | Enhancers Weak transcription ZNF genes & repeats Active TSS Flanking Active TSS Genic enhancers Bivalent Enhancer | TF binding regionChromatin interactive regionlncRNA | 3 gene(s) | inside rSNPs | diseases |
11 | nsv817882 | chr20:14434250-14457834 | Active TSS Weak transcription Enhancers Flanking Active TSS ZNF genes & repeats | n/a | n/a | inside rSNPs | diseases |
12 | nsv529577 | chr20:14434373-14799157 | Weak transcription Enhancers Flanking Active TSS Active TSS Strong transcription ZNF genes & repeats Genic enhancers Bivalent Enhancer | TF binding regionChromatin interactive regionlncRNA | 5 gene(s) | inside rSNPs | diseases |
13 | nsv965933 | chr20:14438430-14464613 | Enhancers Weak transcription Flanking Active TSS Active TSS ZNF genes & repeats | n/a | n/a | inside rSNPs | diseases |
14 | nsv524145 | chr20:14455497-14466618 | Enhancers Weak transcription | n/a | n/a | inside rSNPs | diseases |
No data |
No. | Chromosome Location | Chromatin state | Cell line | Tissue |
---|---|---|---|---|
1 | chr20:14450800-14461400 | Weak transcription | H1 Derived Mesenchymal Stem Cells | ES cell derived |
2 | chr20:14455200-14457600 | Weak transcription | Breast variant Human Mammary Epithelial Cells (vHMEC) | Breast |
3 | chr20:14457200-14460200 | Enhancers | Foreskin Fibroblast Primary Cells skin01 | Skin |