Variant report

Variant	rs62213001
Chromosome Location	chr2:210130376-210130377
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 60 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:50)

rs_ID	r²[population]
rs10497925	0.87[ASN][1000 genomes]
rs11684798	0.82[AMR][1000 genomes];0.87[ASN][1000 genomes]
rs11686360	0.87[ASN][1000 genomes]
rs11687825	0.87[ASN][1000 genomes]
rs12463845	0.82[ASN][1000 genomes]
rs12467914	0.82[ASN][1000 genomes]
rs12471306	0.87[ASN][1000 genomes]
rs13003000	0.82[ASN][1000 genomes]
rs16842736	0.87[ASN][1000 genomes]
rs16842757	0.87[ASN][1000 genomes]
rs16842765	0.82[ASN][1000 genomes]
rs2028894	0.87[ASN][1000 genomes]
rs2084214	0.87[ASN][1000 genomes]
rs2197589	0.87[ASN][1000 genomes]
rs2197594	0.87[ASN][1000 genomes]
rs34705729	0.87[ASN][1000 genomes]
rs4311001	0.91[AFR][1000 genomes];0.90[AMR][1000 genomes];0.84[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs4410222	0.87[AFR][1000 genomes];0.94[AMR][1000 genomes];0.86[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs4411631	0.87[ASN][1000 genomes]
rs55792981	0.80[AMR][1000 genomes];0.87[ASN][1000 genomes]
rs56143543	0.80[AFR][1000 genomes];0.84[AMR][1000 genomes];0.93[ASN][1000 genomes]
rs56285180	0.82[AFR][1000 genomes];0.95[AMR][1000 genomes];0.82[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs56323269	0.81[AMR][1000 genomes];0.87[ASN][1000 genomes]
rs56368522	0.88[AMR][1000 genomes];0.86[ASN][1000 genomes]
rs56406513	0.83[AMR][1000 genomes];0.82[ASN][1000 genomes]
rs57256866	0.80[AMR][1000 genomes];0.90[ASN][1000 genomes]
rs58852357	0.87[ASN][1000 genomes]
rs60432592	0.88[AMR][1000 genomes];0.83[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs60591881	0.87[ASN][1000 genomes]
rs60671709	0.87[ASN][1000 genomes]
rs62212982	0.87[ASN][1000 genomes]
rs62212984	0.87[AFR][1000 genomes];0.87[AMR][1000 genomes];0.83[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs62212986	0.84[AMR][1000 genomes];0.87[ASN][1000 genomes]
rs62212987	0.80[AMR][1000 genomes];0.87[ASN][1000 genomes]
rs62212989	0.92[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs62212990	0.85[AFR][1000 genomes];0.92[AMR][1000 genomes];0.86[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs62212991	0.87[ASN][1000 genomes]
rs62212992	0.87[ASN][1000 genomes]
rs62212993	0.87[ASN][1000 genomes]
rs62212994	0.87[ASN][1000 genomes]
rs62212995	0.85[AFR][1000 genomes];0.87[AMR][1000 genomes];0.80[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs62212996	0.85[AFR][1000 genomes];0.88[AMR][1000 genomes];0.80[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs62212997	0.87[ASN][1000 genomes]
rs62213002	0.81[AMR][1000 genomes];0.87[ASN][1000 genomes]
rs62213003	0.84[AFR][1000 genomes];0.91[AMR][1000 genomes];0.80[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs62213006	0.81[AMR][1000 genomes];0.87[ASN][1000 genomes]
rs62213007	0.84[AMR][1000 genomes];0.81[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs62213009	0.80[AMR][1000 genomes];0.87[ASN][1000 genomes]
rs62213010	0.80[AMR][1000 genomes];0.87[ASN][1000 genomes]
rs62213029	0.87[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:10 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv875761	chr2:209912108-210222004	Active TSS Enhancers Strong transcription Weak transcription ZNF genes & repeats Genic enhancers Flanking Active TSS Transcr. at gene 5' and 3' Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
2	nsv1000214	chr2:209987607-210308626	Strong transcription Bivalent/Poised TSS Enhancers Weak transcription Flanking Active TSS Flanking Bivalent TSS/Enh Active TSS Bivalent Enhancer Transcr. at gene 5' and 3' ZNF genes & repeats Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	diseases
3	nsv536133	chr2:209987607-210308626	Enhancers Weak transcription Flanking Active TSS Active TSS Genic enhancers ZNF genes & repeats Bivalent Enhancer Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	diseases
4	nsv460059	chr2:210058383-210215272	Enhancers Weak transcription Genic enhancers Flanking Active TSS Active TSS Strong transcription Transcr. at gene 5' and 3' Bivalent Enhancer ZNF genes & repeats Bivalent/Poised TSS Flanking Bivalent TSS/Enh	Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
5	nsv584308	chr2:210058383-210215272	Active TSS Transcr. at gene 5' and 3' Weak transcription Enhancers Bivalent/Poised TSS Genic enhancers Strong transcription Flanking Bivalent TSS/Enh Flanking Active TSS Bivalent Enhancer ZNF genes & repeats	Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
6	nsv1006506	chr2:210063871-210212039	Active TSS Enhancers Weak transcription Strong transcription Flanking Active TSS Genic enhancers Transcr. at gene 5' and 3' Bivalent/Poised TSS ZNF genes & repeats Bivalent Enhancer Flanking Bivalent TSS/Enh	Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
7	nsv536134	chr2:210063871-210212039	Weak transcription Flanking Active TSS Active TSS Genic enhancers Enhancers Strong transcription Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent/Poised TSS ZNF genes & repeats Bivalent Enhancer	Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
8	nsv1003864	chr2:210063871-210308626	Flanking Active TSS Enhancers Active TSS Flanking Bivalent TSS/Enh Weak transcription Bivalent/Poised TSS Genic enhancers Bivalent Enhancer Transcr. at gene 5' and 3' Strong transcription ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
9	nsv460060	chr2:210088080-210154210	Enhancers Weak transcription Active TSS	n/a	n/a	inside rSNPs	diseases
10	nsv584309	chr2:210088080-210154210	Enhancers Weak transcription Active TSS	n/a	n/a	inside rSNPs	diseases

No data

Chromatin state (count:1 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr2:210126800-210142200	Weak transcription	ES-I3 Cell Line	embryonic stem cell

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