Variant report

Variant	rs62214422
Chromosome Location	chr20:53170554-53170555
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 18 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:16)

rs_ID	r²[population]
rs17326260	0.83[AFR][1000 genomes];0.84[AMR][1000 genomes]
rs2426538	0.80[EUR][1000 genomes]
rs55638072	0.88[EUR][1000 genomes]
rs59634021	0.81[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs6014046	0.87[AFR][1000 genomes];0.84[AMR][1000 genomes]
rs6014054	0.84[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs6014059	0.86[EUR][1000 genomes]
rs6023341	0.83[AFR][1000 genomes];0.80[AMR][1000 genomes]
rs6023342	0.87[AFR][1000 genomes];0.80[AMR][1000 genomes]
rs6023346	0.87[AFR][1000 genomes];0.84[AMR][1000 genomes]
rs6023364	0.82[EUR][1000 genomes]
rs6068904	0.87[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs62214423	0.87[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs62214426	0.87[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs66842421	0.84[AMR][1000 genomes]
rs67854575	0.87[AFR][1000 genomes];0.80[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv586224	chr20:52474850-53279490	Flanking Active TSS Weak transcription Enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh Genic enhancers Active TSS Bivalent/Poised TSS Strong transcription ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	338 gene(s)	inside rSNPs	diseases
2	nsv1067497	chr20:53146241-53751820	Enhancers Weak transcription Active TSS Flanking Active TSS Bivalent Enhancer Genic enhancers Flanking Bivalent TSS/Enh Strong transcription ZNF genes & repeats Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	66 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:8 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr20:53162200-53172600	Weak transcription	Skeletal Muscle Female	skeletal muscle
2	chr20:53162400-53171600	Weak transcription	iPS-15b Cell Line	embryonic stem cell
3	chr20:53166400-53177400	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
4	chr20:53166800-53173600	Weak transcription	Cortex derived primary cultured neurospheres	brain
5	chr20:53166800-53176800	Weak transcription	Breast Myoepithelial Primary Cells	Breast
6	chr20:53167800-53171000	Weak transcription	Fetal Brain Female	brain
7	chr20:53167800-53174000	Weak transcription	Osteobl	bone
8	chr20:53167800-53189200	Weak transcription	Aorta	Aorta

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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