Variant report

Variant	rs62214745
Chromosome Location	chr20:24860724-24860725
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	lncRNA name	Chromosome Location	lncRNA alias
1	lnc-C20orf3-2	chr20:24860690-24860879	XLOC_013702

Extended variants
information (count: 28 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:20)

rs_ID	r²[population]
rs11698140	0.96[EUR][1000 genomes]
rs1411893	0.88[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs1599977	0.88[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs28854830	0.87[AMR][1000 genomes]
rs28878893	0.88[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs4610125	0.88[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs56257370	0.82[EUR][1000 genomes]
rs6106958	0.88[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs6114897	0.80[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs6114898	0.84[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs6114899	0.80[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs6114901	0.88[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs6114916	0.80[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs6114923	0.80[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs6114925	0.80[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs6114926	0.80[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs62215830	0.84[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs62215831	0.84[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs73341260	0.86[EUR][1000 genomes]
rs73341261	0.86[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:8 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1061412	chr20:24629468-24887869	Weak transcription Enhancers Flanking Active TSS Bivalent Enhancer ZNF genes & repeats Active TSS Genic enhancers Strong transcription Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
2	nsv544216	chr20:24629468-24887869	Weak transcription Bivalent Enhancer Enhancers Flanking Active TSS Genic enhancers Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent/Poised TSS Active TSS Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
3	nsv1061455	chr20:24733120-24861801	Bivalent Enhancer Enhancers Weak transcription Flanking Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Active TSS Genic enhancers Bivalent/Poised TSS	Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
4	nsv544218	chr20:24733120-24861801	Flanking Active TSS Enhancers Weak transcription Bivalent Enhancer Active TSS Genic enhancers ZNF genes & repeats Bivalent/Poised TSS Flanking Bivalent TSS/Enh	Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
5	nsv1062140	chr20:24807962-25304054	Strong transcription Flanking Active TSS Active TSS Weak transcription Bivalent Enhancer Enhancers Bivalent/Poised TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	49 gene(s)	inside rSNPs	diseases
6	nsv544219	chr20:24807962-25304054	Flanking Active TSS Weak transcription ZNF genes & repeats Genic enhancers Bivalent/Poised TSS Active TSS Enhancers Strong transcription Bivalent Enhancer Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	49 gene(s)	inside rSNPs	diseases
7	nsv1056345	chr20:24819570-25168159	Flanking Active TSS Bivalent Enhancer Enhancers Strong transcription Flanking Bivalent TSS/Enh Weak transcription Active TSS Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	34 gene(s)	inside rSNPs	diseases
8	nsv1055341	chr20:24848416-25302271	Weak transcription Enhancers Flanking Active TSS Genic enhancers Active TSS Bivalent/Poised TSS Bivalent Enhancer Strong transcription Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	49 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:2 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr20:24853200-24863400	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
2	chr20:24860600-24861400	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Male	--

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