Variant report

Variant	rs62215129
Chromosome Location	chr20:24971056-24971057
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr20:24970831..24976063-chr20:25037253..25040567,5	MCF-7	breast:

Variant related genes	Relation type
ENSG00000154930	Chromatin interaction

Extended variants
information (count: 7 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:1)

rs_ID	r²[population]
rs62216695	1.00[AFR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:6 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1062140	chr20:24807962-25304054	Strong transcription Flanking Active TSS Active TSS Weak transcription Bivalent Enhancer Enhancers Bivalent/Poised TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	49 gene(s)	inside rSNPs	diseases
2	nsv544219	chr20:24807962-25304054	Flanking Active TSS Weak transcription ZNF genes & repeats Genic enhancers Bivalent/Poised TSS Active TSS Enhancers Strong transcription Bivalent Enhancer Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	49 gene(s)	inside rSNPs	diseases
3	nsv1056345	chr20:24819570-25168159	Flanking Active TSS Bivalent Enhancer Enhancers Strong transcription Flanking Bivalent TSS/Enh Weak transcription Active TSS Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	34 gene(s)	inside rSNPs	diseases
4	nsv1055341	chr20:24848416-25302271	Weak transcription Enhancers Flanking Active TSS Genic enhancers Active TSS Bivalent/Poised TSS Bivalent Enhancer Strong transcription Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	49 gene(s)	inside rSNPs	diseases
5	esv2762068	chr20:24908860-24974986	Strong transcription Flanking Active TSS Weak transcription ZNF genes & repeats Active TSS Genic enhancers Enhancers Transcr. at gene 5' and 3' Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	14 gene(s)	inside rSNPs	diseases
6	nsv585745	chr20:24932028-25007089	Weak transcription Genic enhancers Flanking Active TSS Enhancers Active TSS Strong transcription Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region	11 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:123 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr20:24935200-24971800	Weak transcription	K562	blood
2	chr20:24942000-24972400	Weak transcription	Fetal Heart	heart
3	chr20:24953600-24972000	Weak transcription	NH-A	brain
4	chr20:24957800-24972000	Weak transcription	HUVEC	blood vessel
5	chr20:24958000-24971800	Weak transcription	iPS-18 Cell Line	embryonic stem cell
6	chr20:24958000-24972200	Weak transcription	Fetal Kidney	kidney
7	chr20:24960800-24971800	Weak transcription	Stomach Mucosa	stomach
8	chr20:24961400-24971800	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
9	chr20:24961600-24971800	Weak transcription	Pancreatic Islets	Pancreatic Islet
10	chr20:24961600-24971800	Weak transcription	NHLF	lung
11	chr20:24961600-24972600	Weak transcription	Aorta	Aorta
12	chr20:24961800-24971400	Weak transcription	HMEC	breast
13	chr20:24962000-24971800	Weak transcription	iPS-15b Cell Line	embryonic stem cell
14	chr20:24962000-24971800	Weak transcription	Pancreas	Pancrea
15	chr20:24962200-24971200	Weak transcription	HSMM	muscle
16	chr20:24962200-24971800	Weak transcription	Esophagus	oesophagus
17	chr20:24962200-24971800	Weak transcription	NHDF-Ad	bronchial
18	chr20:24962200-24972600	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
19	chr20:24962600-24971800	Weak transcription	HSMMtube	muscle
20	chr20:24962600-24972000	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
21	chr20:24962800-24971800	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
22	chr20:24962800-24971800	Weak transcription	H9 Cell Line	embryonic stem cell
23	chr20:24962800-24971800	Weak transcription	HUES48 Cell Line	embryonic stem cell
24	chr20:24962800-24971800	Weak transcription	Rectal Smooth Muscle	rectum
25	chr20:24962800-24972000	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
26	chr20:24962800-24972000	Weak transcription	Gastric	stomach
27	chr20:24962800-24972600	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
28	chr20:24962800-24972600	Weak transcription	Ovary	ovary
29	chr20:24963000-24971800	Weak transcription	Fetal Lung	lung
30	chr20:24963200-24972400	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
31	chr20:24963400-24971800	Weak transcription	Osteobl	bone
32	chr20:24963600-24972000	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
33	chr20:24964000-24972400	Weak transcription	Fetal Muscle Trunk	muscle
34	chr20:24964200-24971200	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
35	chr20:24964200-24971400	Weak transcription	Cortex derived primary cultured neurospheres	brain
36	chr20:24964200-24971600	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
37	chr20:24964200-24971600	Weak transcription	Muscle Satellite Cultured Cells	--
38	chr20:24964200-24971600	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
39	chr20:24964200-24971800	Weak transcription	Stomach Smooth Muscle	stomach
40	chr20:24964400-24971400	Weak transcription	HUES64 Cell Line	embryonic stem cell
41	chr20:24964400-24971800	Weak transcription	Duodenum Smooth Muscle	Duodenum
42	chr20:24964600-24971200	Weak transcription	Colon Smooth Muscle	Colon
43	chr20:24964600-24971600	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
44	chr20:24964600-24971600	Weak transcription	Fetal Muscle Leg	muscle
45	chr20:24964600-24972400	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
46	chr20:24964800-24971600	Weak transcription	iPS-20b Cell Line	embryonic stem cell
47	chr20:24964800-24971800	Weak transcription	Right Ventricle	heart
48	chr20:24965000-24972000	Weak transcription	Primary B cells from peripheral blood	blood
49	chr20:24965200-24971600	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
50	chr20:24965200-24971800	Enhancers	Primary T killer naive cells fromperipheralblood	blood

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