Variant report

No.	Distal block	Cell Line	Cell type
1	chr19:38993199..38994007-chr20:53285667..53286532,2	MCF-7	breast:
2	chr20:53286235..53288199-chr20:53294534..53296674,2	MCF-7	breast:
3	chr20:53285820..53286522-chr3:64519471..64520002,2	MCF-7	breast:
4	chr20:53265522..53267786-chr20:53285191..53286958,2	MCF-7	breast:
5	chr20:52840058..52843007-chr20:53284448..53286480,2	MCF-7	breast:
6	chr15:52857884..52859774-chr20:53285881..53288351,2	MCF-7	breast:

rSNPs within LD-proxies of this variant (count:33)

rs_ID	r²[population]
rs17000018	0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17000020	0.92[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs2206906	1.00[ASN][1000 genomes]
rs2206907	1.00[ASN][1000 genomes]
rs2206908	1.00[ASN][1000 genomes]
rs2223748	1.00[ASN][1000 genomes]
rs2223749	1.00[ASN][1000 genomes]
rs2870336	0.85[EUR][1000 genomes]
rs56105195	0.93[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs59123752	0.85[EUR][1000 genomes]
rs6014118	0.94[ASN][1000 genomes]
rs6014119	1.00[ASN][1000 genomes]
rs6014120	1.00[ASN][1000 genomes]
rs6014123	1.00[ASN][1000 genomes]
rs6014124	1.00[ASN][1000 genomes]
rs6014125	1.00[ASN][1000 genomes]
rs6023468	0.86[EUR][1000 genomes]
rs6023469	0.82[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs6023482	1.00[ASN][1000 genomes]
rs6023483	1.00[ASN][1000 genomes]
rs6023485	1.00[ASN][1000 genomes]
rs6023486	1.00[ASN][1000 genomes]
rs6023494	0.85[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs6023498	0.97[ASN][1000 genomes]
rs60684837	0.85[EUR][1000 genomes]
rs6098151	0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs62216271	0.91[AMR][1000 genomes];0.93[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs62216285	0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs62216286	0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs62216287	0.93[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs8119157	0.85[EUR][1000 genomes]
rs966547	0.90[ASN][1000 genomes]
rs993808	1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1067497	chr20:53146241-53751820	Enhancers Weak transcription Active TSS Flanking Active TSS Bivalent Enhancer Genic enhancers Flanking Bivalent TSS/Enh Strong transcription ZNF genes & repeats Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	66 gene(s)	inside rSNPs	diseases
2	nsv1064144	chr20:53175264-53750137	Enhancers Bivalent Enhancer Weak transcription ZNF genes & repeats Strong transcription Flanking Active TSS Genic enhancers Flanking Bivalent TSS/Enh Active TSS Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	66 gene(s)	inside rSNPs	diseases
3	nsv544302	chr20:53175264-53750137	Weak transcription Enhancers Flanking Active TSS Bivalent Enhancer Genic enhancers ZNF genes & repeats Active TSS Strong transcription Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	66 gene(s)	inside rSNPs	diseases
4	nsv1060552	chr20:53234716-53655115	Bivalent Enhancer Enhancers Weak transcription ZNF genes & repeats Flanking Active TSS Active TSS Flanking Bivalent TSS/Enh Strong transcription Bivalent/Poised TSS Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	54 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:1 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr20:53285600-53290000	Weak transcription	iPS-18 Cell Line	embryonic stem cell

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