Variant report

rSNPs within LD-proxies of this variant (count:30)

rs_ID	r²[population]
rs12626569	1.00[AMR][1000 genomes];0.83[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs2409177	0.84[AMR][1000 genomes]
rs55717619	0.89[AFR][1000 genomes];1.00[AMR][1000 genomes];0.80[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs55769509	0.87[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs55781601	0.94[EUR][1000 genomes]
rs55850110	0.89[AFR][1000 genomes];0.92[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs56380215	0.84[AMR][1000 genomes]
rs56409945	0.94[EUR][1000 genomes]
rs62215671	0.84[AMR][1000 genomes]
rs62215672	0.84[AMR][1000 genomes]
rs62215675	0.84[AMR][1000 genomes]
rs62215676	0.84[AMR][1000 genomes]
rs62215677	0.84[AMR][1000 genomes]
rs62215680	0.84[AMR][1000 genomes]
rs62215681	0.84[AMR][1000 genomes]
rs62216530	0.89[AFR][1000 genomes];0.92[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs62216531	0.89[AFR][1000 genomes];0.92[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs62216541	0.89[AFR][1000 genomes];1.00[AMR][1000 genomes];0.85[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs62216543	0.95[ASN][1000 genomes]
rs62216544	0.84[AMR][1000 genomes]
rs62216546	0.93[AMR][1000 genomes]
rs62216549	0.84[AMR][1000 genomes]
rs7277801	0.84[AMR][1000 genomes]
rs7280270	0.84[AMR][1000 genomes]
rs7280561	0.84[AMR][1000 genomes]
rs7280624	0.84[AMR][1000 genomes]
rs73180849	0.84[AMR][1000 genomes]
rs8128533	0.85[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs8134193	0.85[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs870345	0.84[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1056506	chr21:27332898-28049880	Weak transcription Enhancers Strong transcription Flanking Active TSS Genic enhancers ZNF genes & repeats Active TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	25 gene(s)	inside rSNPs	diseases
2	nsv544412	chr21:27332898-28049880	Weak transcription Flanking Active TSS Strong transcription Enhancers Genic enhancers Bivalent/Poised TSS ZNF genes & repeats Active TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	25 gene(s)	inside rSNPs	diseases
3	nsv587335	chr21:27715263-27955385	Weak transcription Active TSS Enhancers Flanking Active TSS ZNF genes & repeats Bivalent/Poised TSS Flanking Bivalent TSS/Enh Strong transcription Genic enhancers Transcr. at gene 5' and 3' Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	9 gene(s)	inside rSNPs	diseases
4	nsv544413	chr21:27942060-28065995	Active TSS Weak transcription Enhancers Bivalent/Poised TSS Flanking Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent Enhancer Transcr. at gene 5' and 3' Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:1 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr21:27949600-27952200	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast

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