Variant report
| Variant | rs62216553 |
|---|---|
| Chromosome Location | chr21:27998254-27998255 |
| allele | G/T |
| Outlinks | Ensembl UCSC |
- TF binding region (count:0)
- CpG islands (count:0)
- Chromatin interactive region (count:0)
- LncRNA region (count:0)
- Mature miRNA region (count: 0)
- miRNA target sites (count:0)
| No data |
| No data |
| No data |
| No data |
| No data |
| No data |
| No data |
rSNPs within LD-proxies of this variant (count:20)
| rs_ID | r2[population] |
|---|---|
| rs12626994 | 0.90[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs2409177 | 0.91[AMR][1000 genomes];0.91[EUR][1000 genomes] |
| rs62215670 | 0.90[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs62215671 | 0.91[AMR][1000 genomes];0.89[EUR][1000 genomes] |
| rs62215672 | 0.91[AMR][1000 genomes];0.91[EUR][1000 genomes] |
| rs62215675 | 0.91[AMR][1000 genomes];0.91[EUR][1000 genomes] |
| rs62215676 | 0.91[AMR][1000 genomes];0.91[EUR][1000 genomes] |
| rs62215677 | 0.91[AMR][1000 genomes];0.91[EUR][1000 genomes] |
| rs62215679 | 0.90[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs62215680 | 0.91[AMR][1000 genomes];0.91[EUR][1000 genomes] |
| rs62215681 | 0.91[AMR][1000 genomes];0.91[EUR][1000 genomes] |
| rs62215708 | 0.84[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs62216544 | 0.81[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs62216549 | 0.91[AMR][1000 genomes];0.86[EUR][1000 genomes] |
| rs7277801 | 0.90[AFR][1000 genomes];0.91[AMR][1000 genomes];0.93[EUR][1000 genomes] |
| rs7280270 | 0.91[AMR][1000 genomes];0.91[EUR][1000 genomes] |
| rs7280561 | 0.91[AMR][1000 genomes];0.91[EUR][1000 genomes] |
| rs7280624 | 0.91[AMR][1000 genomes];0.91[EUR][1000 genomes] |
| rs73180849 | 0.91[AMR][1000 genomes];0.86[EUR][1000 genomes] |
| rs870345 | 0.91[AMR][1000 genomes];0.91[EUR][1000 genomes] |
Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page:
1
| No. | Variant name | Chromosome position | Chromatin state | Related regulatory elements | Target genes | Extended variants | Associated traits |
|---|---|---|---|---|---|---|---|
| 1 | nsv1056506 | chr21:27332898-28049880 | Weak transcription Enhancers Strong transcription Flanking Active TSS Genic enhancers ZNF genes & repeats Active TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent/Poised TSS Bivalent Enhancer | TF binding regionCpG islandChromatin interactive regionlncRNAmiRNA target site | 25 gene(s) | inside rSNPs | diseases |
| 2 | nsv544412 | chr21:27332898-28049880 | Weak transcription Flanking Active TSS Strong transcription Enhancers Genic enhancers Bivalent/Poised TSS ZNF genes & repeats Active TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent Enhancer | TF binding regionCpG islandChromatin interactive regionlncRNAmiRNA target site | 25 gene(s) | inside rSNPs | diseases |
| 3 | nsv544413 | chr21:27942060-28065995 | Active TSS Weak transcription Enhancers Bivalent/Poised TSS Flanking Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent Enhancer Transcr. at gene 5' and 3' Strong transcription | TF binding regionCpG islandChromatin interactive regionlncRNA | 1 gene(s) | inside rSNPs | diseases |
| 4 | nsv913661 | chr21:27979924-28025461 | Weak transcription Enhancers Active TSS | Chromatin interactive regionlncRNA | n/a | inside rSNPs | diseases |
| No data |
| No. | Chromosome Location | Chromatin state | Cell line | Tissue |
|---|---|---|---|---|
| 1 | chr21:27997200-27998600 | Enhancers | Dnd41 | blood |
| 2 | chr21:27997600-27999000 | Weak transcription | iPS DF 19.11 Cell Line | embryonic stem cell |
