Variant report

Variant	rs62219024
Chromosome Location	chr21:16592296-16592297
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr21:16586940..16589372-chr21:16591214..16594501,3	MCF-7	breast:
2	chr21:16584909..16587844-chr21:16591132..16593725,3	K562	blood:

Extended variants
information (count: 10 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:6)

rs_ID	r²[population]
rs16979537	1.00[AMR][1000 genomes]
rs16979542	1.00[AMR][1000 genomes]
rs2823146	1.00[AMR][1000 genomes]
rs2823162	1.00[EUR][1000 genomes]
rs62219002	1.00[AMR][1000 genomes]
rs62219025	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1063385	chr21:16521617-16926212	Enhancers Weak transcription ZNF genes & repeats Flanking Bivalent TSS/Enh Active TSS Strong transcription Bivalent Enhancer Flanking Active TSS Genic enhancers	TF binding region Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases
2	nsv913413	chr21:16537728-16621859	Enhancers Weak transcription ZNF genes & repeats Flanking Active TSS Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh	Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
3	esv1837138	chr21:16588414-16593184	Enhancers Weak transcription Flanking Active TSS Active TSS	Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
4	nsv587059	chr21:16588414-16600408	Active TSS Weak transcription Enhancers Flanking Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh	Chromatin interactive region	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:23 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr21:16586400-16592400	Weak transcription	Liver	Liver
2	chr21:16591400-16592400	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Female	--
3	chr21:16591400-16592400	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Male	--
4	chr21:16591400-16595200	Enhancers	Primary hematopoietic stem cells	blood
5	chr21:16591600-16597400	Enhancers	Primary monocytes fromperipheralblood	blood
6	chr21:16592000-16592600	Enhancers	HSMMtube	muscle
7	chr21:16592000-16592800	Weak transcription	Psoas Muscle	Psoas
8	chr21:16592000-16596400	Enhancers	A549	lung
9	chr21:16592200-16592400	Enhancers	iPS-15b Cell Line	embryonic stem cell
10	chr21:16592200-16592400	Flanking Active TSS	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
11	chr21:16592200-16592400	Enhancers	Primary neutrophils fromperipheralblood	blood
12	chr21:16592200-16592400	Enhancers	Primary B cells from cord blood	blood
13	chr21:16592200-16592600	Flanking Active TSS	Primary hematopoietic stem cells short term culture	blood
14	chr21:16592200-16592600	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin
15	chr21:16592200-16592600	Enhancers	Fetal Kidney	kidney
16	chr21:16592200-16592600	Enhancers	Rectal Mucosa Donor 29	rectum
17	chr21:16592200-16592600	Enhancers	Stomach Mucosa	stomach
18	chr21:16592200-16592600	Flanking Active TSS	Monocytes-CD14+_RO01746	blood
19	chr21:16592200-16593000	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
20	chr21:16592200-16593000	Enhancers	Fetal Thymus	thymus
21	chr21:16592200-16594800	Enhancers	Adipose Nuclei	Adipose
22	chr21:16592200-16596000	Enhancers	HepG2	liver
23	chr21:16592200-16597800	Enhancers	Hela-S3	cervix

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