Variant report

Variant	rs62220412
Chromosome Location	chr21:45759486-45759487
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:411)
CpG islands
(count:61)
Chromatin interactive
region (count:21)
LncRNA
region (count:0)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

(count:411 , 50 per page) page: 1 2 3 4 5 6 7 ... 9

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	POLR2A	chr21:45758845-45759807	Hela-S3	cervix:	n/a	n/a
2	RAD21	chr21:45759279-45759580	H1-hESC	embryonic stem cell:	n/a	n/a
3	MYC	chr21:45758922-45759860	K562	blood:	n/a	n/a
4	YY1	chr21:45758899-45759667	GM12878	blood:	n/a	chr21:45758972-45758986
5	POLR2A	chr21:45758878-45759720	H1-neurons	neurons:	n/a	n/a
6	POLR2A	chr21:45758909-45759631	PANC-1	pancreas:	n/a	n/a
7	RELA	chr21:45759004-45759789	GM15510	blood:	n/a	n/a
8	POLR2A	chr21:45758862-45759908	PFSK-1	brain:	n/a	n/a
9	YY1	chr21:45758915-45759832	H1-hESC	embryonic stem cell:	n/a	chr21:45758972-45758986
10	E2F4	chr21:45759019-45759524	MCF10A-Er-Src	breast:	n/a	n/a
11	MAX	chr21:45758927-45759687	Hela-S3	cervix:	n/a	n/a
12	POLR2A	chr21:45758892-45759860	K562	blood:	n/a	n/a
13	POLR2A	chr21:45758859-45759741	K562	blood:	n/a	n/a
14	ATF3	chr21:45759099-45759539	K562	blood:	n/a	n/a
15	YY1	chr21:45758893-45759583	ECC-1	luminal epithelium:	n/a	chr21:45758972-45758986
16	NRF1	chr21:45758847-45759612	GM12878	blood:	n/a	n/a
17	ELF1	chr21:45758888-45759756	MCF-7	breast:	n/a	n/a
18	TBP	chr21:45758989-45759915	Hela-S3	cervix:	n/a	n/a
19	TBP	chr21:45758951-45759648	HepG2	liver:	n/a	n/a
20	POLR2A	chr21:45758874-45759603	HepG2	liver:	n/a	n/a
21	ZNF384	chr21:45759142-45759551	K562	blood:	n/a	n/a
22	SIN3AK20	chr21:45759125-45759590	H1-hESC	embryonic stem cell:	n/a	n/a
23	JUND	chr21:45758918-45759547	A549	lung:	n/a	chr21:45759464-45759475
24	MXI1	chr21:45758941-45759619	HepG2	liver:	n/a	n/a
25	MXI1	chr21:45758824-45760305	SK-N-SH	brain:	n/a	n/a
26	CREB1	chr21:45758927-45759817	GM12878	blood:	n/a	n/a
27	POLR2A	chr21:45758810-45759782	HUVEC	blood vessel:	n/a	n/a
28	ARID3A	chr21:45759286-45759769	HepG2	liver:	n/a	n/a
29	POLR2A	chr21:45758910-45759837	GM12891	blood:	n/a	n/a
30	POLR2A	chr21:45758907-45759966	GM12878	blood:	n/a	n/a
31	MYC	chr21:45758955-45759574	K562	blood:	n/a	n/a
32	TAF1	chr21:45758949-45759632	GM12891	blood:	n/a	n/a
33	MYC	chr21:45758920-45759576	K562	blood:	n/a	n/a
34	MYC	chr21:45758931-45759541	MCF-7	breast:	n/a	n/a
35	ZNF143	chr21:45759176-45759530	H1-hESC	embryonic stem cell:	n/a	chr21:45759398-45759416
36	TCF3	chr21:45758871-45759565	GM12878	blood:	n/a	chr21:45759357-45759371
37	RAD21	chr21:45759148-45759538	IMR90	lung:	n/a	n/a
38	POLR2A	chr21:45758891-45760119	SK-N-SH	brain:	n/a	n/a
39	JUND	chr21:45758997-45759733	H1-hESC	embryonic stem cell:	n/a	chr21:45759464-45759475
40	SIN3AK20	chr21:45759232-45759517	PFSK-1	brain:	n/a	n/a
41	POLR2A	chr21:45758885-45759919	GM19099	blood:	n/a	n/a
42	JUND	chr21:45758989-45759541	K562	blood:	n/a	chr21:45759464-45759475
43	POLR2A	chr21:45758917-45759817	K562	blood:	n/a	n/a
44	PML	chr21:45758908-45759708	K562	blood:	n/a	n/a
45	MAZ	chr21:45758840-45759788	K562	blood:	n/a	n/a
46	TCF12	chr21:45759009-45759718	ECC-1	luminal epithelium:	n/a	n/a
47	TAF1	chr21:45759162-45759540	GM12878	blood:	n/a	n/a
48	SP4	chr21:45758708-45759601	H1-hESC	embryonic stem cell:	n/a	chr21:45759157-45759168
49	TAF1	chr21:45758912-45759838	ECC-1	luminal epithelium:	n/a	n/a
50	TBL1XR1	chr21:45759024-45759513	GM12878	blood:	n/a	n/a

(count:61 , 50 per page) page: 1 2

No.	Chromosome Location	Cell Line	Cell type	Cell Stage
1	chr21:45759439-45759489	Jurkat	blood:	n/a
2	chr21:45759439-45759489	NH-A	brain:	n/a
3	chr21:45759439-45759489	AoSMC	blood vessel:	n/a
4	chr21:45759439-45759489	MCF-7	breast:	n/a
5	chr21:45759439-45759489	NB4	blood:	n/a
6	chr21:45759439-45759489	AG09319	gingival:	n/a
7	chr21:45759439-45759489	PFSK-1	brain:	n/a
8	chr21:45759439-45759489	AG09309	skin:	n/a
9	chr21:45759439-45759489	GM06990	blood:	n/a
10	chr21:45759439-45759489	HRE	kidney:	n/a
11	chr21:45759439-45759489	HCM	heart:	n/a
12	chr21:45759439-45759489	SK-N-SH_RA	brain:	n/a
13	chr21:45759439-45759489	PrEC	prostate:	n/a
14	chr21:45759439-45759489	SK-N-SH	brain:	n/a
15	chr21:45759439-45759489	HCT-116	colon:	n/a
16	chr21:45759439-45759489	U87	brain:	n/a
17	chr21:45759439-45759489	SAEC	small airway:	n/a
18	chr21:45759439-45759489	NT2-D1	testis:	n/a
19	chr21:45759439-45759489	PANC-1	pancreas:	n/a
20	chr21:45759439-45759489	ProgFib	skin:	n/a
21	chr21:45759439-45759489	SKMC	muscle:	n/a
22	chr21:45759439-45759489	NHBE	bronchial:	n/a
23	chr21:45759439-45759489	GM19239	blood:	n/a
24	chr21:45759439-45759489	NHDF-neo	bronchial:	n/a
25	chr21:45759439-45759489	Caco-2	colon:	n/a
26	chr21:45759439-45759489	HL-60	blood:	n/a
27	chr21:45759439-45759489	HRPEpiC	eye:	n/a
28	chr21:45759439-45759489	IMR90	lung:	fetal
29	chr21:45759439-45759489	HEEpiC	esophagus:	n/a
30	chr21:45759439-45759489	HEK293	kidney:	embryo
31	chr21:45759439-45759489	MCF10A-Er-Src	breast:	n/a
32	chr21:45759439-45759489	ovcar-3	ovarian:	n/a
33	chr21:45759439-45759489	K562	blood:	n/a
34	chr21:45759439-45759489	RPTEC	kidney:	n/a
35	chr21:45759439-45759489	LNCaP	prostate:	n/a
36	chr21:45759439-45759489	SK-N-MC	brain:	n/a
37	chr21:45759439-45759489	HPAEpiC	pulmonary alveolar:	n/a
38	chr21:45759439-45759489	GM12891	blood:	n/a
39	chr21:45759439-45759489	HepG2	liver:	n/a
40	chr21:45759439-45759489	GM12878	blood:	n/a
41	chr21:45759439-45759489	AG10803	skin:	n/a
42	chr21:45759439-45759489	CMK	blood:	n/a
43	chr21:45759439-45759489	GM12892	blood:	n/a
44	chr21:45759439-45759489	ECC-1	luminal epithelium:	n/a
45	chr21:45759439-45759489	HIPEpiC	eye:	n/a
46	chr21:45759439-45759489	BJ	skin:	n/a
47	chr21:45759439-45759489	HNPCEpiC	eye:	n/a
48	chr21:45759439-45759489	Hepatocyte	liver:	n/a
49	chr21:45759439-45759489	HMEC	breast:	n/a
50	chr21:45759439-45759489	HCPEpiC	choroid plexus:	n/a

(count:21 , 50 per page) page: 1

No.	Distal block	Cell Line	Cell type
1	chr21:45759032..45759920-chr4:76598161..76598715,2	Hela-S3	cervix:
2	chr21:45719852..45723806-chr21:45756512..45759776,5	MCF-7	breast:
3	chr21:45137459..45139006-chr21:45757903..45760574,2	K562	blood:
4	chr21:45758316..45760568-chr21:45903461..45906076,2	MCF-7	breast:
5	chr21:45759454..45761302-chr21:45817481..45820269,2	MCF-7	breast:
6	chr21:45758282..45760774-chr21:46492663..46495375,2	K562	blood:
7	chr21:45758998..45760559-chr21:45788952..45791849,2	K562	blood:
8	chr21:45534290..45536622-chr21:45758168..45760821,2	MCF-7	breast:
9	chr21:45758776..45759711-chr5:43483543..43484104,2	Hela-S3	cervix:
10	chr21:45552120..45555319-chr21:45756917..45761085,4	MCF-7	breast:
11	chr21:45525373..45527219-chr21:45757637..45759650,2	K562	blood:
12	chr21:45759142..45761625-chr21:45788983..45791784,2	MCF-7	breast:
13	chr21:45572051..45574951-chr21:45759360..45761487,2	MCF-7	breast:
14	chr21:45757779..45764116-chr21:45768144..45773804,8	K562	blood:
15	chr21:45759073..45759711-chr6:26157874..26158375,2	Hela-S3	cervix:
16	chr10:102295304..102296047-chr21:45758837..45759535,2	Hela-S3	cervix:
17	chr21:45525933..45529754-chr21:45756924..45759975,4	MCF-7	breast:
18	chr21:45756335..45760049-chr21:45874026..45878349,7	MCF-7	breast:
19	chr21:45758851..45761192-chr21:45902340..45905536,3	K562	blood:
20	chr21:45757587..45760440-chr21:45787714..45792009,6	MCF-7	breast:
21	chr21:45759332..45762202-chr21:46401105..46402631,2	K562	blood:

No data

Variant related genes	Relation type
C21orf2	TF binding region
C21orf2	CpG island
ENSG00000142185	Chromatin interaction
ENSG00000235374	Chromatin interaction
ENSG00000197381	Chromatin interaction
ENSG00000160233	Chromatin interaction
ENSG00000229356	Chromatin interaction
ENSG00000141959	Chromatin interaction
ENSG00000260256	Chromatin interaction
ENSG00000151881	Chromatin interaction
ENSG00000160209	Chromatin interaction
ENSG00000158373	Chromatin interaction
ENSG00000160221	Chromatin interaction
ENSG00000241945	Chromatin interaction
ENSG00000268856	Chromatin interaction
ENSG00000228709	Chromatin interaction
ENSG00000138757	Chromatin interaction
ENSG00000249492	Chromatin interaction
ENSG00000166135	Chromatin interaction

Extended variants
information (count: 55 )
Associated
traits (count: 1 )

rSNPs within LD-proxies of this variant (count:6)

rs_ID	r²[population]
rs2838552	0.94[EUR][1000 genomes]
rs4818908	0.94[EUR][1000 genomes]
rs55926438	0.81[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs62220413	1.00[AFR][1000 genomes];0.97[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs62220416	0.90[EUR][1000 genomes]
rs9982136	0.90[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:49 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv33817	chr21:45169412-46031810	Weak transcription Bivalent/Poised TSS Enhancers Flanking Active TSS Strong transcription Genic enhancers Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	121 gene(s)	inside rSNPs	diseases
2	nsv1064420	chr21:45460089-45814986	Enhancers Weak transcription Active TSS Strong transcription Flanking Bivalent TSS/Enh Flanking Active TSS Genic enhancers Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	67 gene(s)	inside rSNPs	diseases
3	nsv544472	chr21:45460089-45814986	Weak transcription Flanking Bivalent TSS/Enh Enhancers Strong transcription Bivalent Enhancer Active TSS Genic enhancers Bivalent/Poised TSS Flanking Active TSS ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	67 gene(s)	inside rSNPs	diseases
4	nsv432155	chr21:45479055-45772388	Weak transcription Enhancers Bivalent Enhancer Strong transcription Flanking Active TSS Transcr. at gene 5' and 3' Bivalent/Poised TSS Genic enhancers Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	66 gene(s)	inside rSNPs	diseases
5	esv1817474	chr21:45540607-45773102	Weak transcription Flanking Active TSS Enhancers Bivalent Enhancer Genic enhancers Bivalent/Poised TSS Active TSS Strong transcription Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	65 gene(s)	inside rSNPs	diseases
6	nsv533679	chr21:45551026-45768578	Enhancers Active TSS Weak transcription Bivalent Enhancer Genic enhancers Flanking Active TSS Strong transcription Flanking Bivalent TSS/Enh Bivalent/Poised TSS ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	64 gene(s)	inside rSNPs	diseases
7	nsv913898	chr21:45555079-45941566	Weak transcription Enhancers Active TSS Strong transcription Genic enhancers Bivalent Enhancer Flanking Active TSS Bivalent/Poised TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	74 gene(s)	inside rSNPs	diseases
8	nsv428042	chr21:45560437-45848190	Enhancers Active TSS Genic enhancers Weak transcription Flanking Active TSS Strong transcription Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	61 gene(s)	inside rSNPs	diseases
9	nsv459295	chr21:45629565-45849864	Genic enhancers Enhancers Weak transcription Flanking Active TSS Bivalent/Poised TSS Bivalent Enhancer Active TSS Strong transcription Flanking Bivalent TSS/Enh ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	57 gene(s)	inside rSNPs	diseases
10	nsv587740	chr21:45629565-45849864	Weak transcription Enhancers Bivalent Enhancer Flanking Active TSS Strong transcription Genic enhancers Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	57 gene(s)	inside rSNPs	diseases
11	nsv913906	chr21:45657970-45818609	Flanking Bivalent TSS/Enh Flanking Active TSS Genic enhancers Bivalent Enhancer Bivalent/Poised TSS Enhancers Active TSS Weak transcription ZNF genes & repeats Strong transcription Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	51 gene(s)	inside rSNPs	diseases
12	esv3361489	chr21:45669073-46013747	Weak transcription Enhancers Flanking Active TSS Strong transcription Active TSS Bivalent Enhancer ZNF genes & repeats Flanking Bivalent TSS/Enh Genic enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	69 gene(s)	inside rSNPs	diseases
13	nsv913910	chr21:45681153-45787250	Bivalent Enhancer Active TSS Enhancers Weak transcription Strong transcription Flanking Active TSS Genic enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	45 gene(s)	inside rSNPs	diseases
14	nsv913911	chr21:45681153-45893907	Bivalent Enhancer Flanking Bivalent TSS/Enh Strong transcription Weak transcription ZNF genes & repeats Enhancers Flanking Active TSS Active TSS Genic enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	55 gene(s)	inside rSNPs	diseases
15	nsv913912	chr21:45687581-45768598	Flanking Active TSS Weak transcription Bivalent/Poised TSS Active TSS Enhancers Strong transcription Bivalent Enhancer Genic enhancers Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	45 gene(s)	inside rSNPs	diseases
16	nsv913913	chr21:45687581-45787250	Strong transcription Active TSS Enhancers Weak transcription Flanking Active TSS Bivalent Enhancer Transcr. at gene 5' and 3' Genic enhancers Bivalent/Poised TSS ZNF genes & repeats Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	45 gene(s)	inside rSNPs	diseases
17	nsv913917	chr21:45697755-45787250	Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Active TSS Flanking Active TSS Weak transcription Bivalent Enhancer Enhancers Bivalent/Poised TSS Strong transcription Genic enhancers ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	45 gene(s)	inside rSNPs	diseases
18	nsv913918	chr21:45697755-45941566	Weak transcription ZNF genes & repeats Bivalent/Poised TSS Flanking Active TSS Active TSS Strong transcription Enhancers Bivalent Enhancer Transcr. at gene 5' and 3' Genic enhancers Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	60 gene(s)	inside rSNPs	diseases
19	nsv913920	chr21:45699404-45824792	Weak transcription Strong transcription Active TSS Enhancers Flanking Active TSS Bivalent Enhancer ZNF genes & repeats Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent/Poised TSS Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	45 gene(s)	inside rSNPs	diseases
20	nsv913921	chr21:45699404-45854431	Enhancers Weak transcription Flanking Bivalent TSS/Enh Flanking Active TSS Active TSS Genic enhancers Strong transcription Bivalent Enhancer Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	50 gene(s)	inside rSNPs	diseases
21	nsv913922	chr21:45699404-45893907	Genic enhancers Enhancers Strong transcription Weak transcription Bivalent Enhancer Flanking Active TSS Active TSS Bivalent/Poised TSS ZNF genes & repeats Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	55 gene(s)	inside rSNPs	diseases
22	nsv913926	chr21:45700641-45764397	Active TSS Weak transcription Flanking Active TSS Strong transcription Enhancers Bivalent Enhancer Bivalent/Poised TSS Genic enhancers Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	45 gene(s)	inside rSNPs	diseases
23	nsv913927	chr21:45700641-45787250	Weak transcription Flanking Active TSS Enhancers Genic enhancers Active TSS Strong transcription ZNF genes & repeats Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	45 gene(s)	inside rSNPs	diseases
24	nsv913928	chr21:45700641-45811343	Weak transcription Enhancers Bivalent Enhancer Bivalent/Poised TSS ZNF genes & repeats Flanking Active TSS Active TSS Strong transcription Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	45 gene(s)	inside rSNPs	diseases
25	nsv913929	chr21:45700641-45860912	Weak transcription Enhancers Flanking Active TSS Strong transcription Bivalent Enhancer Active TSS Genic enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	50 gene(s)	inside rSNPs	diseases
26	nsv913930	chr21:45700641-45893907	ZNF genes & repeats Weak transcription Strong transcription Enhancers Flanking Active TSS Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Genic enhancers Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	55 gene(s)	inside rSNPs	diseases
27	nsv913931	chr21:45703660-45764397	Bivalent Enhancer Weak transcription Enhancers Flanking Active TSS Strong transcription Active TSS Bivalent/Poised TSS Genic enhancers ZNF genes & repeats Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	45 gene(s)	inside rSNPs	diseases
28	nsv913932	chr21:45703660-45787250	Enhancers Strong transcription Weak transcription Active TSS Flanking Active TSS Genic enhancers Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	45 gene(s)	inside rSNPs	diseases
29	nsv913933	chr21:45703660-45811343	ZNF genes & repeats Active TSS Weak transcription Strong transcription Flanking Active TSS Bivalent Enhancer Genic enhancers Enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	45 gene(s)	inside rSNPs	diseases
30	nsv913935	chr21:45709153-45787250	Bivalent/Poised TSS Flanking Active TSS Strong transcription Enhancers Genic enhancers Weak transcription Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	45 gene(s)	inside rSNPs	diseases
31	nsv913936	chr21:45709153-45811343	Active TSS Flanking Active TSS Enhancers Weak transcription Bivalent Enhancer Flanking Bivalent TSS/Enh ZNF genes & repeats Genic enhancers Strong transcription Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	45 gene(s)	inside rSNPs	diseases
32	nsv913937	chr21:45709153-45865167	Genic enhancers Active TSS Enhancers Weak transcription Strong transcription Flanking Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	50 gene(s)	inside rSNPs	diseases
33	nsv913938	chr21:45712588-45787250	Bivalent Enhancer Active TSS Flanking Active TSS Enhancers Weak transcription Strong transcription ZNF genes & repeats Genic enhancers Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	45 gene(s)	inside rSNPs	diseases
34	nsv913939	chr21:45712588-45818609	Weak transcription Bivalent Enhancer Active TSS Flanking Active TSS Strong transcription Enhancers Bivalent/Poised TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	45 gene(s)	inside rSNPs	diseases
35	nsv913940	chr21:45712588-45893907	Strong transcription Bivalent Enhancer Weak transcription Flanking Active TSS Enhancers Flanking Bivalent TSS/Enh Active TSS Genic enhancers Bivalent/Poised TSS ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	55 gene(s)	inside rSNPs	diseases
36	nsv587780	chr21:45722442-45764397	Weak transcription Genic enhancers Strong transcription Active TSS Enhancers Transcr. at gene 5' and 3' Flanking Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	32 gene(s)	inside rSNPs	diseases
37	nsv913941	chr21:45722442-45885589	ZNF genes & repeats Flanking Active TSS Enhancers Bivalent Enhancer Transcr. at gene 5' and 3' Genic enhancers Weak transcription Active TSS Bivalent/Poised TSS Strong transcription Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	39 gene(s)	inside rSNPs	diseases
38	nsv1058359	chr21:45724055-45941566	Transcr. at gene 5' and 3' Weak transcription Flanking Active TSS Bivalent Enhancer Strong transcription Enhancers ZNF genes & repeats Bivalent/Poised TSS Active TSS Flanking Bivalent TSS/Enh Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	48 gene(s)	inside rSNPs	diseases
39	nsv1065203	chr21:45731690-45941566	Strong transcription Enhancers Flanking Active TSS Bivalent Enhancer Weak transcription Active TSS Genic enhancers ZNF genes & repeats Bivalent/Poised TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	44 gene(s)	inside rSNPs	diseases
40	nsv544473	chr21:45731690-45941566	Flanking Active TSS Weak transcription Strong transcription Enhancers Bivalent Enhancer Active TSS Genic enhancers Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	44 gene(s)	inside rSNPs	diseases
41	nsv913942	chr21:45740823-45941566	Strong transcription ZNF genes & repeats Weak transcription Enhancers Genic enhancers Flanking Active TSS Bivalent Enhancer Active TSS Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	43 gene(s)	inside rSNPs	diseases
42	nsv913943	chr21:45740823-46031810	Enhancers Bivalent Enhancer Active TSS Flanking Active TSS Strong transcription Weak transcription Genic enhancers ZNF genes & repeats Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	52 gene(s)	inside rSNPs	diseases
43	nsv1059107	chr21:45749304-45813036	Weak transcription ZNF genes & repeats Enhancers Bivalent Enhancer Bivalent/Poised TSS Flanking Active TSS Active TSS Genic enhancers Strong transcription Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	25 gene(s)	inside rSNPs	diseases
44	nsv828909	chr21:45755663-45770002	Enhancers Flanking Active TSS Weak transcription Active TSS Bivalent/Poised TSS Strong transcription Bivalent Enhancer Genic enhancers Flanking Bivalent TSS/Enh ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	22 gene(s)	inside rSNPs	diseases
45	esv3422475	chr21:45757549-45760697	Enhancers Flanking Active TSS Active TSS Weak transcription Strong transcription Transcr. at gene 5' and 3' Genic enhancers Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	22 gene(s)	inside rSNPs	diseases
46	nsv1067264	chr21:45757599-45941566	ZNF genes & repeats Flanking Active TSS Enhancers Weak transcription Bivalent/Poised TSS Strong transcription Bivalent Enhancer Active TSS Genic enhancers Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	40 gene(s)	inside rSNPs	diseases
47	nsv544474	chr21:45757599-45941566	Bivalent/Poised TSS Weak transcription Strong transcription Enhancers Flanking Active TSS Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent Enhancer Transcr. at gene 5' and 3' Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	40 gene(s)	inside rSNPs	diseases
48	nsv913944	chr21:45757905-45941566	Flanking Active TSS Bivalent Enhancer Weak transcription Bivalent/Poised TSS Enhancers Active TSS Strong transcription ZNF genes & repeats Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	40 gene(s)	inside rSNPs	diseases
49	esv3431505	chr21:45757974-45759872	Enhancers Weak transcription Flanking Active TSS Active TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Genic enhancers Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	21 gene(s)	inside rSNPs	diseases

mRNA abundance (count:1)

SNP	Gene	Cis/trans	Tissue	Source
rs62220412	TRPM2	cis	Muscle Skeletal	GTEx

Chromatin state (count:127 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr21:45757800-45759600	Active TSS	HUES48 Cell Line	embryonic stem cell
2	chr21:45758000-45759600	Active TSS	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
3	chr21:45758000-45759600	Active TSS	iPS-18 Cell Line	embryonic stem cell
4	chr21:45758000-45759600	Active TSS	NHEK	skin
5	chr21:45758000-45760000	Active TSS	ES-I3 Cell Line	embryonic stem cell
6	chr21:45758000-45760000	Active TSS	iPS-20b Cell Line	embryonic stem cell
7	chr21:45758000-45760200	Active TSS	Foreskin Keratinocyte Primary Cells skin03	Skin
8	chr21:45758200-45759600	Active TSS	HUES64 Cell Line	embryonic stem cell
9	chr21:45758200-45759600	Active TSS	iPS-15b Cell Line	embryonic stem cell
10	chr21:45758200-45759600	Active TSS	Breast Myoepithelial Primary Cells	Breast
11	chr21:45758200-45759600	Active TSS	Brain Germinal Matrix	brain
12	chr21:45758200-45759600	Active TSS	Thymus	Thymus
13	chr21:45758200-45759800	Active TSS	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
14	chr21:45758200-45759800	Active TSS	Foreskin Fibroblast Primary Cells skin01	Skin
15	chr21:45758200-45759800	Active TSS	Aorta	Aorta
16	chr21:45758200-45759800	Active TSS	Colon Smooth Muscle	Colon
17	chr21:45758200-45759800	Active TSS	Fetal Kidney	kidney
18	chr21:45758200-45759800	Active TSS	Psoas Muscle	Psoas
19	chr21:45758200-45759800	Active TSS	Rectal Mucosa Donor 29	rectum
20	chr21:45758200-45759800	Active TSS	A549	lung
21	chr21:45758200-45760000	Active TSS	H9 Cell Line	embryonic stem cell
22	chr21:45758200-45760000	Active TSS	Pancreatic Islets	Pancreatic Islet
23	chr21:45758200-45760200	Active TSS	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
24	chr21:45758200-45760200	Active TSS	Foreskin Fibroblast Primary Cells skin02	Skin
25	chr21:45758400-45759600	Active TSS	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
26	chr21:45758400-45759600	Active TSS	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
27	chr21:45758400-45759600	Active TSS	ES-UCSF4 Cell Line	embryonic stem cell
28	chr21:45758400-45759600	Active TSS	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
29	chr21:45758400-45759600	Active TSS	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
30	chr21:45758400-45759600	Active TSS	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
31	chr21:45758400-45759600	Active TSS	Muscle Satellite Cultured Cells	--
32	chr21:45758400-45759600	Active TSS	Cortex derived primary cultured neurospheres	brain
33	chr21:45758400-45759600	Active TSS	Brain Angular Gyrus	brain
34	chr21:45758400-45759600	Active TSS	Brain Anterior Caudate	brain
35	chr21:45758400-45759600	Active TSS	Brain Cingulate Gyrus	brain
36	chr21:45758400-45759600	Active TSS	Brain Hippocampus Middle	brain
37	chr21:45758400-45759600	Active TSS	Brain Substantia Nigra	brain
38	chr21:45758400-45759600	Active TSS	Duodenum Mucosa	Duodenum
39	chr21:45758400-45759600	Active TSS	Fetal Adrenal Gland	Adrenal Gland
40	chr21:45758400-45759600	Active TSS	Fetal Intestine Large	intestine
41	chr21:45758400-45759600	Active TSS	Fetal Intestine Small	intestine
42	chr21:45758400-45759600	Active TSS	Fetal Lung	lung
43	chr21:45758400-45759600	Active TSS	Rectal Mucosa Donor 31	rectum
44	chr21:45758400-45759600	Active TSS	Right Ventricle	heart
45	chr21:45758400-45759600	Active TSS	Skeletal Muscle Male	skeletal muscle
46	chr21:45758400-45759600	Active TSS	Hela-S3	cervix
47	chr21:45758400-45759600	Active TSS	HMEC	breast
48	chr21:45758400-45759600	Active TSS	HSMMtube	muscle
49	chr21:45758400-45759600	Active TSS	K562	blood
50	chr21:45758400-45759600	Active TSS	Monocytes-CD14+_RO01746	blood

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