Variant report

Variant	rs62227199
Chromosome Location	chr21:15928370-15928371
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr21:15927550..15930394-chr21:15933499..15936075,3	K562	blood:
2	chr21:15916384..15919028-chr21:15926638..15928461,2	K562	blood:
3	chr21:15919672..15922192-chr21:15926866..15928968,2	K562	blood:

Variant related genes	Relation type
ENSG00000155307	Chromatin interaction

Extended variants
information (count: 25 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:13)

rs_ID	r²[population]
rs13048538	0.89[AMR][1000 genomes];0.88[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs13048954	0.83[AFR][1000 genomes];0.92[AMR][1000 genomes];0.93[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs13052873	0.87[AMR][1000 genomes];0.91[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs1983537	0.82[AMR][1000 genomes]
rs2142312	0.84[EUR][1000 genomes]
rs2822755	0.83[EUR][1000 genomes]
rs2822756	0.84[EUR][1000 genomes]
rs2822757	0.81[EUR][1000 genomes]
rs2822759	0.84[EUR][1000 genomes]
rs2822764	0.88[AMR][1000 genomes];0.90[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs2822766	0.92[AFR][1000 genomes];0.92[AMR][1000 genomes];0.91[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs36027342	0.88[EUR][1000 genomes]
rs3810576	0.85[AMR][1000 genomes];0.90[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:12 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1059591	chr21:15835325-15969195	Weak transcription Enhancers Flanking Active TSS Genic enhancers ZNF genes & repeats Active TSS Strong transcription Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
2	nsv1056423	chr21:15838309-15948474	Enhancers Flanking Active TSS Active TSS Weak transcription Genic enhancers Strong transcription ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
3	nsv544376	chr21:15855470-15948474	Weak transcription Active TSS Enhancers Genic enhancers Strong transcription Flanking Active TSS ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
4	nsv1065823	chr21:15863224-15948474	Weak transcription Enhancers ZNF genes & repeats Flanking Active TSS Strong transcription Genic enhancers Active TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
5	nsv1057934	chr21:15863224-15969195	Strong transcription Weak transcription Flanking Active TSS Enhancers Active TSS ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
6	nsv1058533	chr21:15896056-15948474	Enhancers Weak transcription ZNF genes & repeats Active TSS Flanking Active TSS Transcr. at gene 5' and 3' Genic enhancers Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
7	nsv544377	chr21:15896056-15948474	Weak transcription Flanking Active TSS ZNF genes & repeats Enhancers Active TSS Genic enhancers Strong transcription Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
8	nsv834045	chr21:15900678-16112850	Enhancers Flanking Active TSS Weak transcription Active TSS ZNF genes & repeats Genic enhancers Strong transcription Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases
9	nsv834046	chr21:15903792-16077369	Weak transcription Enhancers Flanking Active TSS Active TSS Strong transcription ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases
10	esv2763685	chr21:15904945-15933282	Flanking Active TSS Enhancers Weak transcription Active TSS ZNF genes & repeats Strong transcription Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
11	nsv587048	chr21:15908642-15932610	Active TSS Weak transcription Enhancers Flanking Active TSS Genic enhancers ZNF genes & repeats Strong transcription Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
12	nsv522627	chr21:15908642-15936503	Enhancers Active TSS Weak transcription Flanking Active TSS Transcr. at gene 5' and 3' Genic enhancers ZNF genes & repeats Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:22 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr21:15925000-15933200	Weak transcription	K562	blood
2	chr21:15926800-15929000	Enhancers	Primary T helper memory cells from peripheral blood 2	blood
3	chr21:15926800-15929200	Enhancers	Dnd41	blood
4	chr21:15927000-15928600	Enhancers	Primary T cells from cord blood	blood
5	chr21:15927000-15928600	Enhancers	Primary T helper naive cells fromperipheralblood	blood
6	chr21:15927000-15929000	Enhancers	Primary T helper naive cells from peripheral blood	blood
7	chr21:15927000-15929000	Enhancers	Primary T helper cells PMA-I stimulated	--
8	chr21:15927000-15931800	Enhancers	Primary B cells from peripheral blood	blood
9	chr21:15927200-15928400	Enhancers	Primary T killer memory cells from peripheral blood	blood
10	chr21:15927200-15928600	Enhancers	Primary T helper memory cells from peripheral blood 1	blood
11	chr21:15927200-15928600	Enhancers	Primary T helper 17 cells PMA-I stimulated	--
12	chr21:15927200-15928600	Enhancers	Primary T cells effector/memory enriched fromperipheralblood	blood
13	chr21:15927200-15929000	Enhancers	Primary T helper cells fromperipheralblood	blood
14	chr21:15927200-15929000	Enhancers	GM12878-XiMat	blood
15	chr21:15927600-15929000	Weak transcription	Fetal Thymus	thymus
16	chr21:15927600-15932800	Weak transcription	iPS-18 Cell Line	embryonic stem cell
17	chr21:15927600-15933600	Weak transcription	ES-I3 Cell Line	embryonic stem cell
18	chr21:15927800-15928400	Enhancers	Primary T killer naive cells fromperipheralblood	blood
19	chr21:15927800-15928600	Enhancers	Primary hematopoietic stem cells short term culture	blood
20	chr21:15928000-15930600	Enhancers	Primary B cells from cord blood	blood
21	chr21:15928200-15928600	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Male	--
22	chr21:15928200-15928600	Enhancers	HUVEC	blood vessel

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links