Variant report

Variant	rs62230461
Chromosome Location	chr3:24523664-24523665
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr3:24516699..24519082-chr3:24520454..24523738,3	K562	blood:

Extended variants
information (count: 8 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:5)

rs_ID	r²[population]
rs62228859	0.84[EUR][1000 genomes]
rs62230463	1.00[EUR][1000 genomes]
rs62230464	0.98[EUR][1000 genomes]
rs73036459	0.85[EUR][1000 genomes]
rs73036460	1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv834641	chr3:24465862-24633738	Enhancers Bivalent Enhancer Active TSS Weak transcription Flanking Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS Strong transcription Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA	19 gene(s)	inside rSNPs	diseases
2	nsv834642	chr3:24475558-24640593	Enhancers Flanking Bivalent TSS/Enh Weak transcription Bivalent Enhancer Flanking Active TSS Bivalent/Poised TSS Strong transcription Active TSS Genic enhancers Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA	19 gene(s)	inside rSNPs	diseases
3	nsv1012975	chr3:24500706-24615644	Enhancers Flanking Active TSS Bivalent Enhancer Active TSS Weak transcription Flanking Bivalent TSS/Enh Strong transcription Bivalent/Poised TSS Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA	18 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:44 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:24499600-24526800	Weak transcription	Rectal Mucosa Donor 31	rectum
2	chr3:24509600-24531000	Weak transcription	Fetal Lung	lung
3	chr3:24515600-24533200	Weak transcription	Stomach Mucosa	stomach
4	chr3:24517800-24523800	Weak transcription	Gastric	stomach
5	chr3:24517800-24527000	Weak transcription	Lung	lung
6	chr3:24517800-24527000	Weak transcription	Stomach Smooth Muscle	stomach
7	chr3:24517800-24527000	Weak transcription	Hela-S3	cervix
8	chr3:24517800-24528600	Weak transcription	Placenta Amnion	Placenta Amnion
9	chr3:24517800-24529000	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
10	chr3:24519200-24526800	Weak transcription	Sigmoid Colon	Sigmoid Colon
11	chr3:24519400-24525200	Weak transcription	K562	blood
12	chr3:24519400-24525400	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
13	chr3:24519400-24527400	Weak transcription	Right Atrium	heart
14	chr3:24519400-24532800	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
15	chr3:24520400-24525200	Weak transcription	Primary monocytes fromperipheralblood	blood
16	chr3:24520400-24525400	Weak transcription	H9 Cell Line	embryonic stem cell
17	chr3:24520400-24529800	Weak transcription	ES-I3 Cell Line	embryonic stem cell
18	chr3:24521000-24523800	Enhancers	Breast Myoepithelial Primary Cells	Breast
19	chr3:24521000-24524200	Enhancers	Psoas Muscle	Psoas
20	chr3:24521400-24524400	Enhancers	Colon Smooth Muscle	Colon
21	chr3:24521400-24525600	Enhancers	Skeletal Muscle Male	skeletal muscle
22	chr3:24521400-24527400	Weak transcription	Pancreas	Pancrea
23	chr3:24521800-24525200	Weak transcription	Aorta	Aorta
24	chr3:24522000-24523800	Weak transcription	Left Ventricle	heart
25	chr3:24522000-24525200	Weak transcription	Right Ventricle	heart
26	chr3:24522000-24525400	Enhancers	Fetal Intestine Small	intestine
27	chr3:24522400-24525000	Weak transcription	Primary hematopoietic stem cells short term culture	blood
28	chr3:24522400-24525200	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
29	chr3:24522400-24525200	Weak transcription	Monocytes-CD14+_RO01746	blood
30	chr3:24522600-24526600	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
31	chr3:24522600-24528600	Weak transcription	Adipose Nuclei	Adipose
32	chr3:24522800-24524000	Enhancers	iPS-15b Cell Line	embryonic stem cell
33	chr3:24522800-24525200	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
34	chr3:24523000-24524400	Enhancers	Fetal Intestine Large	intestine
35	chr3:24523000-24534000	Weak transcription	Rectal Mucosa Donor 29	rectum
36	chr3:24523200-24524200	Enhancers	Skeletal Muscle Female	skeletal muscle
37	chr3:24523400-24523800	Weak transcription	HMEC	breast
38	chr3:24523400-24524000	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
39	chr3:24523400-24524000	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
40	chr3:24523400-24524200	Enhancers	Duodenum Mucosa	Duodenum
41	chr3:24523600-24524000	Enhancers	Rectal Smooth Muscle	rectum
42	chr3:24523600-24524200	Enhancers	HUES64 Cell Line	embryonic stem cell
43	chr3:24523600-24524200	Enhancers	Liver	Liver
44	chr3:24523600-24524400	Enhancers	HepG2	liver

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