Variant report

Variant	rs62238354
Chromosome Location	chr3:59928751-59928752
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 13 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:10)

rs_ID	r²[population]
rs12496762	0.89[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs13090091	0.86[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs17061494	0.86[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs34272009	0.84[AFR][1000 genomes];0.94[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs34382742	0.89[AFR][1000 genomes];0.94[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs35886433	0.84[AFR][1000 genomes];0.94[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs62238347	0.86[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs62238352	0.87[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs62238353	0.89[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs7610652	0.82[AMR][1000 genomes];0.83[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv428085	chr3:59782509-60070116	Enhancers Flanking Active TSS Weak transcription Flanking Bivalent TSS/Enh Active TSS Genic enhancers ZNF genes & repeats Strong transcription Transcr. at gene 5' and 3' Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
2	nsv1014983	chr3:59884024-60558331	Enhancers Weak transcription Flanking Active TSS Active TSS Genic enhancers Strong transcription ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
3	nsv590387	chr3:59890976-60481459	Enhancers Weak transcription Flanking Active TSS Active TSS Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3' Strong transcription Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:7 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:59920800-59928800	Strong transcription	Dnd41	blood
2	chr3:59924600-59928800	Enhancers	Primary T helper cells fromperipheralblood	blood
3	chr3:59927200-59938400	Weak transcription	Fetal Thymus	thymus
4	chr3:59927600-59940200	Weak transcription	Thymus	Thymus
5	chr3:59928000-59937200	Weak transcription	Primary T helper naive cells from peripheral blood	blood
6	chr3:59928200-59932800	Weak transcription	Primary T cells from cord blood	blood
7	chr3:59928400-59938200	Weak transcription	Primary T helper naive cells fromperipheralblood	blood

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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