Variant report

Variant	rs62238974
Chromosome Location	chr22:32568024-32568025
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 87 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:80)

rs_ID	r²[population]
rs10483162	1.00[AFR][1000 genomes]
rs10483163	1.00[AFR][1000 genomes]
rs12158162	0.80[EUR][1000 genomes]
rs12160688	0.85[EUR][1000 genomes]
rs1475996	1.00[AFR][1000 genomes]
rs1475997	1.00[AFR][1000 genomes]
rs1547411	1.00[AFR][1000 genomes]
rs17682583	1.00[AFR][1000 genomes]
rs17682819	1.00[AFR][1000 genomes]
rs17683011	1.00[AFR][1000 genomes]
rs17683310	1.00[AFR][1000 genomes]
rs17683430	1.00[AFR][1000 genomes]
rs17683448	1.00[AFR][1000 genomes]
rs17683471	1.00[AFR][1000 genomes]
rs17683704	1.00[AFR][1000 genomes]
rs17744899	1.00[AFR][1000 genomes]
rs17744994	1.00[AFR][1000 genomes]
rs17745316	1.00[AFR][1000 genomes]
rs17745543	1.00[AFR][1000 genomes]
rs1810414	1.00[AFR][1000 genomes]
rs2006867	1.00[AFR][1000 genomes]
rs2018440	1.00[AFR][1000 genomes]
rs2413063	1.00[AFR][1000 genomes]
rs2413064	1.00[AFR][1000 genomes]
rs2413065	1.00[AFR][1000 genomes]
rs2413066	1.00[AFR][1000 genomes]
rs2899173	1.00[AFR][1000 genomes]
rs2899174	1.00[AFR][1000 genomes]
rs33954001	1.00[AFR][1000 genomes]
rs33954397	1.00[AFR][1000 genomes]
rs41430344	1.00[AFR][1000 genomes]
rs4289286	1.00[AFR][1000 genomes]
rs45462396	1.00[AFR][1000 genomes];0.82[EUR][1000 genomes]
rs45494991	1.00[AFR][1000 genomes];0.82[EUR][1000 genomes]
rs4820060	1.00[AFR][1000 genomes]
rs4820061	1.00[AFR][1000 genomes]
rs4820062	1.00[AFR][1000 genomes]
rs4820067	1.00[AFR][1000 genomes]
rs4820068	1.00[AFR][1000 genomes]
rs4821002	1.00[AFR][1000 genomes]
rs4821003	1.00[AFR][1000 genomes]
rs4821005	1.00[AFR][1000 genomes]
rs4821006	1.00[AFR][1000 genomes]
rs4821010	1.00[AFR][1000 genomes]
rs4821012	1.00[AFR][1000 genomes]
rs4821013	1.00[AFR][1000 genomes]
rs4821015	1.00[AFR][1000 genomes]
rs4821016	1.00[AFR][1000 genomes]
rs4821018	1.00[AFR][1000 genomes]
rs4821020	1.00[AFR][1000 genomes]
rs4821021	1.00[AFR][1000 genomes]
rs4821022	1.00[AFR][1000 genomes]
rs4821023	1.00[AFR][1000 genomes]
rs4821024	1.00[AFR][1000 genomes]
rs4821025	1.00[AFR][1000 genomes]
rs4821027	1.00[AFR][1000 genomes]
rs4821028	1.00[AFR][1000 genomes]
rs4821029	1.00[AFR][1000 genomes]
rs4821030	1.00[AFR][1000 genomes]
rs4821031	1.00[AFR][1000 genomes]
rs4821036	1.00[AFR][1000 genomes]
rs4821037	1.00[AFR][1000 genomes]
rs55695217	1.00[AFR][1000 genomes]
rs55739336	1.00[AFR][1000 genomes]
rs56199077	1.00[AFR][1000 genomes]
rs5994483	0.82[EUR][1000 genomes]
rs5998256	0.82[EUR][1000 genomes]
rs5998272	0.87[EUR][1000 genomes]
rs62238977	0.84[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs62238978	0.82[EUR][1000 genomes]
rs62240588	1.00[AFR][1000 genomes]
rs733907	1.00[AFR][1000 genomes]
rs733908	1.00[AFR][1000 genomes]
rs73391051	1.00[AFR][1000 genomes]
rs734091	1.00[AFR][1000 genomes]
rs734092	1.00[AFR][1000 genomes]
rs743763	1.00[AFR][1000 genomes]
rs743764	1.00[AFR][1000 genomes]
rs976915	1.00[AFR][1000 genomes]
rs976916	1.00[AFR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:7 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv834177	chr22:32416679-32594663	Flanking Active TSS Enhancers Bivalent Enhancer Bivalent/Poised TSS ZNF genes & repeats Weak transcription Flanking Bivalent TSS/Enh Strong transcription Genic enhancers Active TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	37 gene(s)	inside rSNPs	diseases
2	nsv948789	chr22:32462505-32764760	Enhancers Weak transcription Bivalent/Poised TSS Flanking Bivalent TSS/Enh Flanking Active TSS Bivalent Enhancer Active TSS Strong transcription ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	43 gene(s)	inside rSNPs	diseases
3	nsv1065175	chr22:32467617-32761093	Enhancers Weak transcription Bivalent Enhancer Flanking Active TSS Active TSS Bivalent/Poised TSS Flanking Bivalent TSS/Enh Strong transcription ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	43 gene(s)	inside rSNPs	diseases
4	nsv544680	chr22:32467617-32761093	Enhancers Bivalent Enhancer Weak transcription Flanking Active TSS Bivalent/Poised TSS Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Strong transcription Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	43 gene(s)	inside rSNPs	diseases
5	esv2830423	chr22:32477718-32767825	Enhancers Active TSS Weak transcription Bivalent/Poised TSS Flanking Bivalent TSS/Enh Flanking Active TSS Bivalent Enhancer Genic enhancers Strong transcription ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	43 gene(s)	inside rSNPs	diseases
6	esv2422247	chr22:32486448-32788258	Strong transcription Flanking Active TSS Bivalent Enhancer Enhancers Flanking Bivalent TSS/Enh Weak transcription Bivalent/Poised TSS Active TSS ZNF genes & repeats Transcr. at gene 5' and 3' Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	44 gene(s)	inside rSNPs	diseases
7	nsv834178	chr22:32490449-32677521	Bivalent/Poised TSS Active TSS Weak transcription Flanking Bivalent TSS/Enh Flanking Active TSS Enhancers Bivalent Enhancer Strong transcription ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	35 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:1 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr22:32567400-32569000	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell

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