The 2.0 version of rSNPBase

Variant report

Variant rs62243076
Chromosome Location chr3:20087944-20087945
allele C/T
Outlinks Ensembl   UCSC
Chromatin state (count:96 , 50 per page) page: 1 2
No. Chromosome Location Chromatin state Cell line Tissue
1 chr3:20083000-20098600 Weak transcription H1 BMP4 Derived Mesendoderm Cultured Cells ES cell derived
2 chr3:20083200-20088600 Weak transcription Ovary ovary
3 chr3:20083400-20089000 Weak transcription Fetal Brain Male brain
4 chr3:20083800-20089200 Enhancers Left Ventricle heart
5 chr3:20083800-20092000 Weak transcription hESC Derived CD184+ Endoderm Cultured Cells ES cell derived
6 chr3:20084000-20089400 Weak transcription H9 Derived Neuronal Progenitor Cultured Cells ES cell derived
7 chr3:20084000-20089400 Weak transcription Brain Germinal Matrix brain
8 chr3:20084000-20091200 Enhancers Brain Substantia Nigra brain
9 chr3:20084200-20089400 Weak transcription H9 Derived Neuron Cultured Cells ES cell derived
10 chr3:20085000-20092400 Weak transcription Gastric stomach
11 chr3:20085000-20095800 Weak transcription Spleen Spleen
12 chr3:20085200-20088200 Weak transcription Fetal Stomach stomach
13 chr3:20085200-20088600 Weak transcription Fetal Muscle Trunk muscle
14 chr3:20085200-20089400 Weak transcription Foreskin Fibroblast Primary Cells skin01 Skin
15 chr3:20085200-20089800 Weak transcription HSMMtube muscle
16 chr3:20085200-20092200 Weak transcription H1 Derived Mesenchymal Stem Cells ES cell derived
17 chr3:20085200-20092800 Weak transcription Breast variant Human Mammary Epithelial Cells (vHMEC) Breast
18 chr3:20085200-20098200 Weak transcription Fetal Kidney kidney
19 chr3:20085400-20088200 Enhancers Foreskin Melanocyte Primary Cells skin03 Skin
20 chr3:20085400-20088600 Weak transcription Osteobl bone
21 chr3:20085400-20089000 Weak transcription Primary neutrophils fromperipheralblood blood
22 chr3:20085400-20089000 Weak transcription Fetal Lung lung
23 chr3:20085400-20089000 Weak transcription NHDF-Ad bronchial
24 chr3:20085400-20089400 Weak transcription NHLF lung
25 chr3:20085400-20089600 Weak transcription Pancreatic Islets Pancreatic Islet
26 chr3:20085400-20090200 Enhancers Ganglion Eminence derived primary cultured neurospheres brain
27 chr3:20085400-20095800 Weak transcription Foreskin Melanocyte Primary Cells skin01 Skin
28 chr3:20085400-20096000 Weak transcription Pancreas Pancrea
29 chr3:20085600-20088800 Weak transcription Adipose Derived Mesenchymal Stem Cell Cultured Cells ES cell derived
30 chr3:20085600-20088800 Weak transcription Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells embryonic stem cell
31 chr3:20085600-20088800 Weak transcription Duodenum Smooth Muscle Duodenum
32 chr3:20085600-20089000 Weak transcription Bone Marrow Derived Cultured Mesenchymal Stem Cells Bone marrow
33 chr3:20085600-20089000 Weak transcription Muscle Satellite Cultured Cells --
34 chr3:20085600-20089000 Weak transcription Fetal Muscle Leg muscle
35 chr3:20085600-20089200 Weak transcription Mesenchymal Stem Cell Derived Adipocyte Cultured Cells ES cell derived
36 chr3:20085600-20089800 Enhancers Primary T killer memory cells from peripheral blood blood
37 chr3:20085600-20090400 Enhancers Primary T helper memory cells from peripheral blood 2 blood
38 chr3:20085600-20095400 Weak transcription Fetal Adrenal Gland Adrenal Gland
39 chr3:20085800-20088000 Weak transcription Breast Myoepithelial Primary Cells Breast
40 chr3:20085800-20088200 Enhancers Primary T cells effector/memory enriched fromperipheralblood blood
41 chr3:20085800-20088200 Weak transcription Rectal Smooth Muscle rectum
42 chr3:20085800-20088400 Weak transcription Small Intestine intestine
43 chr3:20085800-20089400 Weak transcription Rectal Mucosa Donor 31 rectum
44 chr3:20085800-20089400 Weak transcription Stomach Mucosa stomach
45 chr3:20085800-20089600 Weak transcription Primary hematopoietic stem cells blood
46 chr3:20085800-20090200 Enhancers Primary T helper naive cells from peripheral blood blood
47 chr3:20085800-20093000 Enhancers Primary T helper naive cells fromperipheralblood blood
48 chr3:20085800-20096000 Weak transcription Primary mononuclear cells fromperipheralblood Blood
49 chr3:20086200-20088000 Weak transcription Fetal Thymus thymus
50 chr3:20086200-20088200 Weak transcription Primary monocytes fromperipheralblood blood

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Last update: Aug 31, 2015