Variant report

Variant	rs62244806
Chromosome Location	chr3:46352908-46352909
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 4 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:1)

rs_ID	r²[population]
rs62242981	0.88[AMR][1000 genomes];0.96[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv876734	chr3:45725031-46468467	Weak transcription Enhancers Active TSS Flanking Active TSS Genic enhancers Bivalent/Poised TSS Strong transcription Bivalent Enhancer Flanking Bivalent TSS/Enh ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	42 gene(s)	inside rSNPs	diseases
2	esv3323840	chr3:46352348-46497196	Strong transcription Weak transcription Enhancers Flanking Active TSS Bivalent Enhancer Active TSS Genic enhancers Bivalent/Poised TSS ZNF genes & repeats Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	10 gene(s)	inside rSNPs	diseases
3	esv3389382	chr3:46352798-46496696	Enhancers ZNF genes & repeats Weak transcription Bivalent Enhancer Flanking Active TSS Transcr. at gene 5' and 3' Genic enhancers Bivalent/Poised TSS Strong transcription Active TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	10 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:18 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:46350800-46367600	Enhancers	Primary monocytes fromperipheralblood	blood
2	chr3:46352200-46353000	Enhancers	NHEK	skin
3	chr3:46352400-46353000	Enhancers	HUES64 Cell Line	embryonic stem cell
4	chr3:46352400-46353000	Enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin
5	chr3:46352400-46353000	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin
6	chr3:46352400-46353000	Enhancers	HMEC	breast
7	chr3:46352400-46353400	Enhancers	H9 Cell Line	embryonic stem cell
8	chr3:46352400-46355600	Flanking Active TSS	Monocytes-CD14+_RO01746	blood
9	chr3:46352600-46353000	Enhancers	ES-I3 Cell Line	embryonic stem cell
10	chr3:46352600-46353000	Enhancers	HUES6 Cell Line	embryonic stem cell
11	chr3:46352600-46353400	Enhancers	iPS-18 Cell Line	embryonic stem cell
12	chr3:46352600-46353800	Weak transcription	Lung	lung
13	chr3:46352600-46358000	Weak transcription	Spleen	Spleen
14	chr3:46352800-46353000	Flanking Active TSS	iPS-20b Cell Line	embryonic stem cell
15	chr3:46352800-46353000	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
16	chr3:46352800-46353200	Enhancers	H1 Cell Line	embryonic stem cell
17	chr3:46352800-46353400	Active TSS	ES-WA7 Cell Line	embryonic stem cell
18	chr3:46352800-46353400	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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