Variant report

Variant	rs622459
Chromosome Location	chr15:54787671-54787672
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 29 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:22)

rs_ID	r²[population]
rs10744957	0.93[CHB][hapmap];0.85[JPT][hapmap]
rs11636139	0.92[JPT][hapmap]
rs1356859	0.92[JPT][hapmap]
rs2414311	0.80[EUR][1000 genomes]
rs2414315	0.93[CHB][hapmap];0.85[JPT][hapmap]
rs28521348	0.91[AMR][1000 genomes];0.98[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs2947006	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs4301968	0.80[EUR][1000 genomes]
rs473676	1.00[CEU][hapmap];0.93[CHB][hapmap];0.86[JPT][hapmap];0.92[YRI][hapmap];0.85[AFR][1000 genomes];0.98[AMR][1000 genomes];0.98[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs4774693	0.89[CEU][hapmap]
rs527645	0.92[AMR][1000 genomes];0.97[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs556837	1.00[CEU][hapmap];0.93[CHB][hapmap];0.85[JPT][hapmap];0.85[YRI][hapmap];0.97[AMR][1000 genomes];0.98[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs582890	1.00[CEU][hapmap];0.93[CHB][hapmap];0.86[JPT][hapmap];0.93[YRI][hapmap];0.85[AFR][1000 genomes];0.98[AMR][1000 genomes];0.98[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs598720	0.83[AFR][1000 genomes];0.98[AMR][1000 genomes];0.98[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs600078	0.97[AMR][1000 genomes];0.97[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs62010143	0.93[ASN][1000 genomes]
rs628645	0.91[AMR][1000 genomes];0.98[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs6493681	0.93[CHB][hapmap];0.92[JPT][hapmap];0.92[ASN][1000 genomes]
rs6493682	0.85[CEU][hapmap];0.87[CHB][hapmap];0.85[JPT][hapmap]
rs665177	0.98[AMR][1000 genomes];0.99[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs8025195	0.92[JPT][hapmap];0.85[YRI][hapmap]
rs953464	0.82[CEU][hapmap]

Variant overlapped rSNPs/rCNVs (count:7 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv817539	chr15:54132584-55095235	Weak transcription Flanking Active TSS Enhancers Bivalent/Poised TSS Active TSS Flanking Bivalent TSS/Enh Genic enhancers ZNF genes & repeats Bivalent Enhancer Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	8 gene(s)	inside rSNPs	diseases
2	nsv904233	chr15:54703195-54797177	Enhancers ZNF genes & repeats Weak transcription	TF binding region Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
3	nsv457153	chr15:54705902-54795040	Enhancers ZNF genes & repeats Weak transcription	TF binding region Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
4	nsv569504	chr15:54705902-54795040	Enhancers Weak transcription ZNF genes & repeats	TF binding region Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
5	nsv904235	chr15:54710873-54795040	Weak transcription Enhancers ZNF genes & repeats	TF binding region Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
6	nsv569506	chr15:54715550-54796592	Enhancers Weak transcription ZNF genes & repeats	TF binding region Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
7	nsv1038660	chr15:54756184-55039913	Enhancers Weak transcription Bivalent Enhancer Flanking Active TSS ZNF genes & repeats Active TSS Strong transcription Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:9 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr15:54775200-54794000	Weak transcription	Fetal Lung	lung
2	chr15:54777800-54810400	Weak transcription	Aorta	Aorta
3	chr15:54785200-54791000	Weak transcription	iPS-15b Cell Line	embryonic stem cell
4	chr15:54785600-54791200	Weak transcription	ES-I3 Cell Line	embryonic stem cell
5	chr15:54787000-54791200	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
6	chr15:54787200-54790800	Weak transcription	HUES48 Cell Line	embryonic stem cell
7	chr15:54787200-54791000	Weak transcription	iPS-20b Cell Line	embryonic stem cell
8	chr15:54787400-54790800	Weak transcription	HUES64 Cell Line	embryonic stem cell
9	chr15:54787400-54791000	Weak transcription	iPS-18 Cell Line	embryonic stem cell

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