Variant report

Variant	rs62247959
Chromosome Location	chr3:42923007-42923008
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:0)
CpG islands
(count:0)
Chromatin interactive
region (count:11)
LncRNA
region (count:0)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

No data

(count:11 , 50 per page) page: 1

No.	Distal block	Cell Line	Cell type
1	chr3:42821670..42822964-chr3:42922020..42923129,17	K562	blood:
2	chr3:42822357..42822898-chr3:42922644..42923160,2	MCF-7	breast:
3	chr3:42922580..42925142-chr3:42943866..42947450,3	MCF-7	breast:
4	chr3:42921878..42924561-chr3:43679352..43680976,2	MCF-7	breast:
5	chr3:42843552..42845487-chr3:42920948..42923647,2	K562	blood:
6	chr3:42785917..42786497-chr3:42922204..42923133,2	K562	blood:
7	chr3:42871457..42873559-chr3:42921313..42923126,29	K562	blood:
8	chr3:42911291..42913761-chr3:42921199..42924078,2	K562	blood:
9	chr3:42820154..42820984-chr3:42922418..42923141,2	K562	blood:
10	chr3:42872135..42872993-chr3:42922252..42923146,3	MCF-7	breast:
11	chr3:42872603..42873488-chr3:42922115..42923031,5	MCF-7	breast:

No data

Variant related genes	Relation type
ENSG00000160746	Chromatin interaction
ENSG00000182983	Chromatin interaction

rs_ID	r²[population]
rs62249012	1.00[AFR][1000 genomes]
rs73074963	1.00[AFR][1000 genomes]

SNP	Gene	Cis/trans	Tissue	Source
rs62247959	CCBP2,LOC729085	cis	temporal cortex	BrainEAC

Chromatin state (count:83 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:42922000-42923200	Active TSS	H9 Cell Line	embryonic stem cell
2	chr3:42922000-42923200	Active TSS	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
3	chr3:42922000-42923200	Flanking Active TSS	Primary hematopoietic stem cells	blood
4	chr3:42922000-42923200	Flanking Active TSS	Primary hematopoietic stem cells G-CSF-mobilized Female	--
5	chr3:42922000-42923200	Flanking Active TSS	Cortex derived primary cultured neurospheres	brain
6	chr3:42922000-42923200	Bivalent/Poised TSS	Foreskin Fibroblast Primary Cells skin02	Skin
7	chr3:42922000-42923200	Flanking Active TSS	Foreskin Melanocyte Primary Cells skin03	Skin
8	chr3:42922000-42923200	Flanking Active TSS	Stomach Smooth Muscle	stomach
9	chr3:42922000-42923400	Flanking Active TSS	Primary T helper naive cells fromperipheralblood	blood
10	chr3:42922000-42923400	Active TSS	Fetal Brain Female	brain
11	chr3:42922200-42923200	Flanking Active TSS	Primary T killer naive cells fromperipheralblood	blood
12	chr3:42922200-42923200	Flanking Active TSS	Primary hematopoietic stem cells G-CSF-mobilized Male	--
13	chr3:42922200-42923200	Active TSS	NH-A	brain
14	chr3:42922200-42923400	Flanking Active TSS	Dnd41	blood
15	chr3:42922400-42923200	Active TSS	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
16	chr3:42922400-42923200	Active TSS	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
17	chr3:42922400-42923200	Active TSS	Foreskin Keratinocyte Primary Cells skin03	Skin
18	chr3:42922400-42923200	Active TSS	Brain Dorsolateral Prefrontal Cortex	brain
19	chr3:42922600-42923200	Enhancers	Primary T helper memory cells from peripheral blood 1	blood
20	chr3:42922600-42923200	Flanking Active TSS	HUVEC	blood vessel
21	chr3:42922800-42923200	Flanking Active TSS	H1 Cell Line	embryonic stem cell
22	chr3:42922800-42923200	Flanking Active TSS	H9 Derived Neuron Cultured Cells	ES cell derived
23	chr3:42922800-42923200	Flanking Active TSS	HUES48 Cell Line	embryonic stem cell
24	chr3:42922800-42923200	Flanking Active TSS	HUES6 Cell Line	embryonic stem cell
25	chr3:42922800-42923200	Flanking Active TSS	HUES64 Cell Line	embryonic stem cell
26	chr3:42922800-42923200	Flanking Active TSS	iPS-18 Cell Line	embryonic stem cell
27	chr3:42922800-42923200	Flanking Active TSS	Breast Myoepithelial Primary Cells	Breast
28	chr3:42922800-42923200	Enhancers	Primary monocytes fromperipheralblood	blood
29	chr3:42922800-42923200	Flanking Active TSS	Primary T cells from cord blood	blood
30	chr3:42922800-42923200	Flanking Active TSS	Primary T killer memory cells from peripheral blood	blood
31	chr3:42922800-42923200	Flanking Active TSS	Ganglion Eminence derived primary cultured neurospheres	brain
32	chr3:42922800-42923200	Flanking Active TSS	Foreskin Fibroblast Primary Cells skin01	Skin
33	chr3:42922800-42923200	Flanking Active TSS	Foreskin Keratinocyte Primary Cells skin02	Skin
34	chr3:42922800-42923200	Flanking Active TSS	Colon Smooth Muscle	Colon
35	chr3:42922800-42923200	Flanking Active TSS	Fetal Brain Male	brain
36	chr3:42922800-42923200	Flanking Active TSS	Fetal Intestine Small	intestine
37	chr3:42922800-42923200	Flanking Active TSS	K562	blood
38	chr3:42923000-42923200	Flanking Active TSS	ES-I3 Cell Line	embryonic stem cell
39	chr3:42923000-42923200	Flanking Active TSS	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
40	chr3:42923000-42923200	Flanking Active TSS	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
41	chr3:42923000-42923200	Flanking Active TSS	iPS-15b Cell Line	embryonic stem cell
42	chr3:42923000-42923200	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
43	chr3:42923000-42923200	Enhancers	Primary hematopoietic stem cells short term culture	blood
44	chr3:42923000-42923200	Enhancers	Primary T helper memory cells from peripheral blood 2	blood
45	chr3:42923000-42923200	Enhancers	Primary T helper cells fromperipheralblood	blood
46	chr3:42923000-42923200	Enhancers	Primary T cells effector/memory enriched fromperipheralblood	blood
47	chr3:42923000-42923200	Active TSS	Foreskin Melanocyte Primary Cells skin01	Skin
48	chr3:42923000-42923200	Enhancers	Adipose Nuclei	Adipose
49	chr3:42923000-42923200	Flanking Active TSS	Brain Angular Gyrus	brain
50	chr3:42923000-42923200	Enhancers	Brain Cingulate Gyrus	brain

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links