Variant report

Variant	rs62248536
Chromosome Location	chr3:34344814-34344815
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 5 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:1)

rs_ID	r²[population]
rs1406567	1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1001599	chr3:34149575-34437701	Weak transcription Enhancers Flanking Active TSS Bivalent Enhancer ZNF genes & repeats Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases
2	nsv536533	chr3:34149575-34437701	Enhancers Weak transcription Bivalent Enhancer Flanking Active TSS ZNF genes & repeats Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases
3	nsv876682	chr3:34149814-34401451	Weak transcription Enhancers Bivalent Enhancer Flanking Active TSS ZNF genes & repeats Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
4	nsv916961	chr3:34203879-34506554	Enhancers Flanking Active TSS Weak transcription Bivalent Enhancer Active TSS ZNF genes & repeats Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	10 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:18 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:34341600-34345000	Weak transcription	Duodenum Mucosa	Duodenum
2	chr3:34342400-34345200	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
3	chr3:34342400-34345400	Weak transcription	Fetal Heart	heart
4	chr3:34342600-34345000	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
5	chr3:34343200-34345000	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
6	chr3:34343200-34345000	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
7	chr3:34343200-34346800	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
8	chr3:34343200-34352000	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
9	chr3:34343400-34345000	Weak transcription	iPS-20b Cell Line	embryonic stem cell
10	chr3:34344400-34345200	Bivalent Enhancer	HUES48 Cell Line	embryonic stem cell
11	chr3:34344400-34345400	Bivalent Enhancer	iPS-15b Cell Line	embryonic stem cell
12	chr3:34344400-34345800	Bivalent Enhancer	HUES6 Cell Line	embryonic stem cell
13	chr3:34344600-34345200	Enhancers	Fetal Intestine Large	intestine
14	chr3:34344800-34345400	Enhancers	ES-I3 Cell Line	embryonic stem cell
15	chr3:34344800-34345400	Enhancers	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
16	chr3:34344800-34345600	Enhancers	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
17	chr3:34344800-34345600	Enhancers	iPS-18 Cell Line	embryonic stem cell
18	chr3:34344800-34345800	Enhancers	Fetal Intestine Small	intestine

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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